The official implementation of DiffAbXL benchmarked in the paper "Benchmarking Generative Models for Antibody Design".

Simple exact-matching algorithm to standardise drug names appearing on the DrugBank open-access repository

Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo

A plug-and-play library for parameter-efficient-tuning (Delta Tuning)

Easy-to-use tutorials for accessing SNOMED APIs within 5 min using various programming languages

Tokenizers and Machine Learning Models for biological sequence data

Trax — Deep Learning with Clear Code and Speed

This repository contains implementations and illustrative code to accompany DeepMind publications

Main repository for "CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters"

Pushshift API

Amundsen is a metadata driven application for improving the productivity of data analysts, data scientists and engineers when interacting with data.

Compute mean and variance of the linked emulator

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

Latest version of MedEX/J (Japanese disease name extractor)

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

A package for uncertainty estimation with PyTorch

SeqScore: Scoring for named entity recognition and other sequence labeling tasks

💥 Use the latest Stanza (StanfordNLP) research models directly in spaCy

A Large-Scale Few-Shot Relation Extraction Dataset

Code for the EMNLP 2021 Paper "Active Learning by Acquiring Contrastive Examples" & the ACL 2022 Paper "On the Importance of Effectively Adapting Pretrained Language Models for Active Learning"

KenLM: Faster and Smaller Language Model Queries

Public runnable examples of using John Snow Labs' NLP for Apache Spark.

Sentence paraphrase generation at the sentence level

A very simple framework for state-of-the-art Natural Language Processing (NLP)

💥 displaCy.js: An open-source NLP visualiser for the modern web

material-ui components for Dash

Source code for the EMNLP 2020 paper "Cold-Start and Interpretability: Turning Regular Expressions intoTrainable Recurrent Neural Networks"

A paraphrase generator built using the T5 model which produces paraphrased English sentences.