三 R package: An Inclusive, Unifying API for Progress Updates

A nextflow pipeline for decontamination of short reads, long reads and contigs

SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-level genome assemblies from NCBI and offers customization opti…

A tool for generating consensus long-read assemblies for bacterial genomes

A Rust library and command line tool for working with genomic ranges and their data.

An alternative conflict resolution strategy for R

Python packaging and dependency management made easy

A drop-in replacement for dplyr, powered by DuckDB for performance.

DuckDB is an analytical in-process SQL database management system

An extremely fast Python package and project manager, written in Rust.

Transform code from using implicit function calls to explicit using the double-colon operator.

Positron, a next-generation data science IDE

A collection of (mostly) technical things every software developer should know about

A plugin that does one thing only: Detect and manage duplicate items in Zotero.

Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

Program for estimating admixture proportions and doing principal component analysis of a single NGS sample

mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.

A quality control analysis tool for high throughput sequencing data

Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data

Genome-wide scan for balancing selection using beta statistic

Pinpoints the mutation favored by selection

Easy grafs, ANOVAs and posthoc comparisons.

R package to draw syntenic plots in 3 different styles

Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

Support for blend modes in ggplot2

An R library for managing and documenting dplyr data pipelines

Chat with your notes & see links to related content with AI embeddings. Use local models or 100+ via APIs like Claude, Gemini, ChatGPT & Llama 3

Row-oriented workflows in R with the tidyverse