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Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault Contributor

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@compgenunb

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fmalmeida/README.md

Hello 😁 👋

Hello there, my name is Felipe Almeida, a brazilian scientist, bioinformatician, pipeline developer and problem solver. My main interests are: Bioinformatics, genomic surveillance, precision medicine, and microbial genomics. You can also find me on twitter @fmarquesalmeida, stackoverflow and linkedin.

Professional info

Senior Bioinformatician at ZS Copenhagen.

Academic info

Some of my favourite tools:

Nextflow Python R bash

My stats

Top Langs

Felipe Github Stats

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  1. ngs-preprocess Public

    A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

    Nextflow 34 5

  2. MpGAP Public

    Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

    Nextflow 59 11

  3. bacannot Public

    Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

    Nextflow 101 9

  4. gff-toolbox Public

    Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.

    Python 7 1

  5. easy_circos Public

    easy_circos is a simple conda package that aims on rapidly and easily creating minimal circos configurations templates based on input data.

    Shell 8 2

  6. KirstLab/asc_seurat Public

    R 24 9

351 contributions in the last year

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Activity overview

Contributed to nf-core/scrnaseq, fmalmeida/bacannot, fmalmeida/ngs-preprocess and 12 other repositories
Loading A graph representing fmalmeida's contributions from April 21, 2024 to April 26, 2025. The contributions are 76% commits, 11% pull requests, 8% code review, 5% issues. 8% Code review 5% Issues 11% Pull requests 76% Commits

Contribution activity

April 2025

Opened 1 pull request in 1 repository
nf-core/modules 1 open
Reviewed 1 pull request in 1 repository
nf-core/modules 1 pull request

Created an issue in nf-core/modules that received 2 comments

[FEATURE] update cellranger modules containers to v9

Is your feature request related to a problem? Please describe Update cellranger modules to use newest version of the tool. Newer kits required the …

2 comments
Opened 1 other issue in 1 repository
fmalmeida/bacannot 1 open
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