R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

Norwegian marine samples COI diversity

Analyses des données projet phytovirus

Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

an R package to process raw metabarcoding data into a phyloseq object using a single command

a game to learn (or teach) how to use standard commands in a Unix shell

Comparison of Adaptive Immune Receptor Repertoires

Tool for analyzing includes in C++

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Internship 2019 projects of Milena Koenigshofen at CIRAD, Montpellier Supervisor: Frédéric Mahé

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

Accelerating ggplot2

Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.

Here i add all scripts of my PHD thesis

Tutorials for R

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

An Open Source Machine Learning Framework for Everyone

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

Flash-cart optimized file and folder layouts.

Tesseract Open Source OCR Engine (main repository)

Using kallisto for metagenomic analysis

An analysis and visualization platform for 'omics data

A library for working with phylogenetic and population genetic data.

EukRef curation pipeline

Wraps swarm to perform pooled dereplication

A Game Boy research project and emulator written in Rust