A curated list of Nextflow pipelines inspired by other awesome-* lists.
- cbcrg/ampa-nf - Automated prediction of protein antimicrobial regions
- cbcrg/mta-nf - A method for best alignment of evaluation trees
- nextflow-io/rnatoy - A basic RNA-Seq pipeline
- cbcrg/piper-nf - A RNA mapping pipeline
- guigolab/grape-nf - An automated RNA-seq pipeline.
- mfoll/robust-regression-caller - Robust regression multi-sample variant caller
- nmdp-bioinformatics/flow - Consensus assembly and variant calling workflow.
- sanger-pathogens/annot-nf - Eukaryotic genome annotation pipeline implemented in Nextflow
- andremrsantos/next-pipes-lghm - Eukaryotic genome annotation pipeline.
- averasd/nextflow-kallisto
- averasd/nextflow-rnastar
- bihealth/ngs_pipelines
- cbcrg/benchfam
- cbcrg/grape-nf - Yet another RNA-Seq pipeline (deprecated)
- charite/ngspipeline
- heuermh/bdg-nextflow - Transform BAM files found recursively in a given directory to ADAM format.
- robsyme/nextflow-annotate - Fungal genome annotation workflow
- robsyme/nextflow-mapping
- robsyme/workflows-proteogenomics - Versioned, shareable and replicable workflows for proteogenomics.
- meissnert/nextflow-gtool
- nmdp-bioinformatics/flow-validation
- skner/iasi-pipe
- Nextflow Workbench - Workbench that make it easier to write data analysis workflows with Nextflow