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ExceptionGroup: unhandled errors in a TaskGroup
File "starlette/_utils.py", line 87, in collapse_excgroups
yield
File "starlette/middleware/base.py", line 190, in __call__
async with anyio.create_task_group() as task_group:
File "anyio/_backends/_asyncio.py", line 678, in __aexit__
raise BaseExceptionGroup(
AttributeError: 'NoneType' object has no attribute 'endswith'
(29 additional frame(s) were not displayed)
...
File "galaxy/webapps/galaxy/services/history_contents.py", line 482, in get_dataset_collection_archive_for_download
return self.__stream_dataset_collection(trans, dataset_collection_instance)
File "galaxy/webapps/galaxy/services/history_contents.py", line 501, in __stream_dataset_collection
archive = hdcas.stream_dataset_collection(
File "galaxy/managers/hdcas.py", line 39, in stream_dataset_collection
write_dataset_collection(dataset_collection_instance, archive)
File "galaxy/managers/hdcas.py", line 50, in write_dataset_collection
for file_path, relpath in hda.datatype.to_archive(dataset=hda, name=name):
File "galaxy/datatypes/data.py", line 451, in to_archive
if dataset.datatype.composite_type or dataset.extension.endswith("html"):
The text was updated successfully, but these errors were encountered:
We can find them with
```
planemo lint -s command,tool_xsd,tests,general,help,inputs,citations,xml_order --recursive
```
If we don't set an output format the hda extension becomes null in the
database, and we fail at various places in the galaxy codebase.
We can make Galaxy more resilient to it, but this is an easy fix here.
Galaxy issue is here: galaxyproject/galaxy#18383
Add mising format attributes
We can find them with
```
planemo lint -s command,tool_xsd,tests,general,help,inputs,citations,xml_order --recursive
```
If we don't set an output format the hda extension becomes null in the
database, and we fail at various places in the galaxy codebase.
We can make Galaxy more resilient to it, but this is an easy fix here.
Galaxy issue is here: galaxyproject/galaxy#18383
This happens if tools don't define an output format. It's a tool bug, but I think falling back to
data
as a default extension is reasonable.Sentry Issue: GALAXY-MAIN-YRR
The text was updated successfully, but these errors were encountered: