Reference-guided transcript discovery and quantification for long read RNA-Seq data

PhenoTagger

Genomic VCF to tab-separated values

A small benchmark for comparing gene ranking methods

🍱 R implementation for selected machine learning methods with deep learning frameworks (Keras, Tensorflow)

GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

WFA-lib: Wavefront alignment algorithm library v2

Awesome papers about unifying LLMs and KGs

R-friendly threading in C++

Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more