Copyright 2009-2016 Gavin Band, University of Oxford
This package comprises the QCTOOL program for quality control of a set of SNP marker data, together with some other utility programs. For full details see http://www.well.ox.ac.uk/~gav/qctool_v2.
Basic instructions for obtaining and/or compiling QCTOOL can be found on the QCTOOL download page. For further information, see the wiki page on compiling QCTOOL.
QCTOOL was written by Gavin Band, based on an initial design by Gavin Band and Jonathan Marchini.
QCTOOL gratefully makes use of functionality from the following projects:
- zlib (http://zlib.net/)
- the boost C++ libraries (http://www.boost.org)
- sqlite3 (http://www.sqlite.org),
- the Eigen library (http://eigen.tuxfamily.org)
- the SNPHWE code from Wigginton et al (http://www.sph.umich.edu/csg/abecasis/Exact)
- the Zstandard library(http://www.zstd.net).