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Mmseqs #84

Merged
merged 13 commits into from
Nov 20, 2024
Merged

Mmseqs #84

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125f9d3
change BLAST to MMseqs2
gbouras13 Nov 20, 2024
f5470ac
change env
gbouras13 Nov 20, 2024
490db14
miniforge
gbouras13 Nov 20, 2024
a82ee0e
miniforge again
gbouras13 Nov 20, 2024
7f376a5
mmseqs2
gbouras13 Nov 20, 2024
c16c61d
fix mmseqs colnames format
gbouras13 Nov 20, 2024
7675f08
fix linting/formatting
gbouras13 Nov 20, 2024
4e5ee82
pin v13.45111 MMseqs2 to ensure it all works with pharokka
gbouras13 Nov 20, 2024
22bb1c9
fix custom db bug
gbouras13 Nov 20, 2024
852683d
actually bump the version
gbouras13 Nov 20, 2024
1e5f16c
logdir fix
gbouras13 Nov 20, 2024
353841b
fix custom issue
gbouras13 Nov 20, 2024
7e19b60
fix lint
gbouras13 Nov 20, 2024
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miniforge
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@gbouras13
gbouras13 committed Nov 20, 2024
commit 490db14c3149e6267cc971d51590f2e3dcf927ca
2 changes: 1 addition & 1 deletion .github/workflows/ci.yaml
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Expand Up @@ -28,7 +28,7 @@ jobs:
environment-file: build/environment.yaml
python-version: ${{ matrix.python-version }}
auto-activate-base: false
miniforge-variant: Mambaforge
miniforge-variant: Miniforge
channels: conda-forge,bioconda,defaults
channel-priority: strict
auto-update-conda: true
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2 changes: 1 addition & 1 deletion .github/workflows/release.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ jobs:
activate-environment: dnaapler
environment-file: build/environment.yaml
auto-activate-base: false
miniforge-variant: Mambaforge
miniforge-variant: Miniforge
channels: conda-forge,bioconda,defaults
channel-priority: strict
auto-update-conda: true
Expand Down
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