Create subworkflows #86
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filosi
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Mar 5, 2024
* Create Input Validation workflow * Add chunking workflow * Add workflows pruning and qc * Fix bug in emit channel * Add missing includes * Add regenie_step1 workflow * Add regenie step2 subworkflow * Add lift-over subworkflow * Add reporting subworkflow and fix publish param * Forma modules * Format subworkflows * Fix test cases * Set correct process name * Fix formatting * Fix problem with empty channels * Add regenie subworkflow * Add missing files * Fix tests * Restructure pipeline * Update module path * Add input channels as arguments to subworkflows * Fix includes * Move publishDir before includes * Fix publish dir * Migrate test cases to nf-test * Describe new parameters * Add missing gem * Set correct projectDir
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