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Pull requests: genepi/nf-gwas

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Pull requests list

Krferrier main
#109 by seppinho was merged Dec 20, 2024 Loading…
1
Add Step 1 log to report
#108 by krferrier was closed Dec 20, 2024 Loading…
Add docker-build action to take advantage of caching and use sharding
#105 by lukfor was merged May 29, 2024 Loading…
Update github-action to use latest nf-test and Nextflow versions
#102 by lukfor was merged Mar 7, 2024 Loading…
Switch to Nextflow.error method
#97 by seppinho was merged Jan 31, 2024 Loading…
Testting/add snapshots
#95 by AmstlerStephan was merged Jan 30, 2024 Loading…
5 tasks done
1
Updated documentation
#94 by salvidm was merged Jan 30, 2024 Loading…
1
Update regenie version to 3.4
#93 by filosi was merged Dec 15, 2023 Loading…
3 tasks done
Integration of VCF and BGEN for gene-based testing
#92 by filosi was merged Dec 15, 2023 Loading…
7 tasks done
Update nf-test to v0.8.2
#91 by AmstlerStephan was merged Dec 14, 2023 Loading…
Feature/regenie optional params
#89 by seppinho was merged Oct 8, 2023 Loading…
Update to latest regenie version
#88 by seppinho was merged Oct 8, 2023 Loading…
Add nf-validations
#87 by seppinho was merged Oct 4, 2023 Loading…
Create subworkflows
#86 by seppinho was merged Sep 29, 2023 Loading…
Features/update nf test
#85 by seppinho was merged Sep 8, 2023 Loading…
Optimize config and delete unused modules
#84 by seppinho was merged Aug 8, 2023 Loading…
Parallelize gwas-report-index
#83 by seppinho was merged Aug 8, 2023 Loading…
Improve parallelization
#82 by lukfor was merged Aug 6, 2023 Loading…
Simplify filter and merge logic
#81 by seppinho was merged Aug 5, 2023 Loading…
Annotate genes using genomic-utils
#80 by lukfor was merged Aug 3, 2023 Loading…
Fix sorting
#79 by seppinho was merged Jul 28, 2023 Loading…
Improve merge logic
#77 by seppinho was merged Jul 26, 2023 Loading…
Remove unused tabix-merge.jar file
#76 by ejseqera was merged Jul 12, 2023 Loading…
1
Feature/merge results
#73 by filosi was closed Jul 26, 2023 Loading…
1
solution for gene-level chromosome separated files input
#71 by filosi was closed Dec 15, 2023 Loading…
1
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