add a test on path validations

ggonnella · Jun 18, 2020 · 4e06a1c · 4e06a1c
1 parent 55b7968
commit 4e06a1c
Show file tree

Hide file tree

Showing 3 changed files with 29 additions and 0 deletions.
diff --git a/tests/test_api_groups_validation.py b/tests/test_api_groups_validation.py
@@ -0,0 +1,17 @@
+import gfapy
+import unittest
+
+class TestAPIGroupsValidation(unittest.TestCase):
+
+  def test_invalid_path_gfa2(self):
+    with self.assertRaises(gfapy.NotFoundError):
+      g = gfapy.Gfa.from_file("tests/testdata/invalid_path.gfa2")
+
+  def test_invalid_path_gfa2_vlevel0(self):
+    g = gfapy.Gfa.from_file("tests/testdata/invalid_path.gfa2", vlevel = 0)
+    with self.assertRaises(gfapy.NotFoundError):
+      g.validate()
+
+  def test_valid_path_gfa2(self):
+    # nothing raised
+    g = gfapy.Gfa.from_file("tests/testdata/valid_path.gfa2")
diff --git a/tests/testdata/invalid_path.gfa2 b/tests/testdata/invalid_path.gfa2
@@ -0,0 +1,6 @@
+H	VN:Z:2.0
+S	1	6	AGCGTA
+S	2	6	TAACAG
+S	3	6	GCTAGT
+S	4	6	TCAGCG
+O	P1	1+ 2+ 3+ 5+
diff --git a/tests/testdata/valid_path.gfa2 b/tests/testdata/valid_path.gfa2
@@ -0,0 +1,6 @@
+H	VN:Z:2.0
+S	1	6	AGCGTA
+S	2	6	TAACAG
+S	3	6	GCTAGT
+S	4	6	TCAGCG
+O	P1	1+ 2+ 3+ 4+