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Open source Python library for building bioimage analysis pipelines

Jupyter Notebook 130 28 Updated Dec 29, 2024

Metagenomic classificator using maximal-exact matches with KATKA kernel and minimizer digests

C++ 1 1 Updated Sep 4, 2024

Official Pytorch Implementation of GraphiT

Python 107 12 Updated Jul 6, 2021
Jupyter Notebook 2 5 Updated Jul 12, 2023

This python package lets you automatically download and parse european forest data from several different public sources.

Python 5 Updated May 19, 2022

Example Nextflow pipelines and programming techniques

Nextflow 103 25 Updated Dec 4, 2024

A collection of examples introducing to Nextflow scripting

Groovy 2 3 Updated Oct 18, 2016

A Tapis API for interfacing with Globus

Python 1 Updated Dec 3, 2024

GitHub action to submit a workflow repository to WorkflowHub

Ruby 2 Updated Oct 3, 2024

Scripts for using the globus data transfer tool

Python 2 2 Updated Dec 8, 2023

KubeBuilder Workshops

Dockerfile 156 79 Updated Nov 20, 2019

Dynamically generate Apache Airflow DAGs from YAML configuration files

Python 1,224 184 Updated Dec 31, 2024

Making DAG construction easier

Python 247 11 Updated Nov 8, 2024

Empowering People Ethically with the leading open source alternative to Google Analytics that gives you full control over your data. Matomo lets you easily collect data from websites & apps and vis…

PHP 20,033 2,670 Updated Jan 1, 2025

Open Source Continuous File Synchronization

Go 66,533 4,346 Updated Dec 31, 2024

Single Sign-on, RBAC, and Multi tenancy for MLFlow

Go 7 1 Updated Jul 24, 2024

A toolkit to run Ray applications on Kubernetes

Go 1,350 426 Updated Dec 31, 2024

A tool to generate JSON Schema files from Excel Sheet

JavaScript 12 9 Updated Jun 6, 2018

Technical Analysis Indicators - Pandas TA is an easy to use Python 3 Pandas Extension with 150+ Indicators

Python 5,604 1,079 Updated Jul 28, 2024

A kubernetes based framework for hassle free handling of datasets

Go 486 68 Updated Dec 27, 2024

A flask template with Bootstrap, asset bundling+minification with webpack, starter templates, and registration/authentication. For use with cookiecutter.

Python 4,612 766 Updated Jan 1, 2025

Open source research data repository software

Java 897 493 Updated Dec 31, 2024

Beautiful Interactive tables in your Flask templates.

Python 298 73 Updated Nov 22, 2024

Deployment files to instanziate zenodo on kubernetes

HTML 2 Updated Mar 21, 2023

A deep learning framework for molecular docking

C++ 648 149 Updated Nov 22, 2024

Example code from the book "Deep Learning for the Life Sciences"

Jupyter Notebook 363 153 Updated Sep 17, 2021

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Python 5,629 1,710 Updated Dec 24, 2024

The Mojo Programming Language

Mojo 23,488 2,596 Updated Dec 28, 2024

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

Jupyter Notebook 28,179 12,820 Updated Jun 13, 2024

flask, heroku, environment variables, sqlalchemy, flask-migrate, redis

Python 679 270 Updated Jul 25, 2020
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