Description

A Python implementation of a probabilistic BLAST algorithm that builds off of JiaShun-Xiao/BLAST-bioinfor-tool

Authors

Project by Grace Hu & Xingyu Chen

Install requirements from requirements.txt
Run generate_index.py to generate Pandas dataframe (saved in .csv file) containing the index used in BLAST
There are test methods available in Test.py to run

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
BLAST_algorithm.py		BLAST_algorithm.py
BoreoEutherian_11.csv		BoreoEutherian_11.csv
BoreoEutherian_7.csv		BoreoEutherian_7.csv
BoreoEutherian_9.csv		BoreoEutherian_9.csv
LICENSE		LICENSE
README.md		README.md
Report.pdf		Report.pdf
Test.py		Test.py
chr22.maf.ancestors.42000000.complete.boreo.conf.txt		chr22.maf.ancestors.42000000.complete.boreo.conf.txt
chr22.maf.ancestors.42000000.complete.boreo.fa.txt		chr22.maf.ancestors.42000000.complete.boreo.fa.txt
generate_index.py		generate_index.py
requirements.txt		requirements.txt
testacc2.png		testacc2.png