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apa: research platform for the study of alternative polyadenylation, expressRNA.org

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Name		Name	Last commit message	Last commit date
Latest commit History 91 Commits
analysis		analysis
annotation		annotation
bed		bed
bin		bin
comps		comps
docs		docs
extract		extract
map		map
model		model
motifs		motifs
path		path
polya		polya
projects/1_polya_signal_occurence		projects/1_polya_signal_occurence
rnamap		rnamap
script		script
.gitignore		.gitignore
README		README
__init__.py		__init__.py

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apaExpress python source

Research platform for the analysis of NGS 3'-end targeted data.

Dependencies

* R : library amap : http://cran.r-project.org/web/packages/amap/index.html
* pybio : NGS analytics with Python: https://github.com/grexor/pybio
* scikit-learn: http://scikit-learn.org/0.11/install.html
* polyar (http://cub.comsats.edu.pk/polyapredict.htm)
* python regex (easy_install regex)