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95 changes: 6 additions & 89 deletions README.history
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Request for:
Celera Assembler Software
Copyright 1999-2004 Applera Corporation. All Rights reserved.

The Celera Assembler is described below. To request a copy,
complete this form and FAX it to "Genome Software" at 240-453-3324 (USA).

The Celera Assembler Software (Copyright 1999-2004, Applera Corporation. All
rights reserved.) (the "Software") is covered by one or more U.S. patents and is
being made available free of charge by Applera Corporation subject to the terms
and conditions of the GNU General Public License, version 2, as published by the
Free Software Foundation (the "GNU General Public License"). The Software is
free software; you can redistribute it and/or modify it under the terms of the
GNU General Public License. The Software is distributed in the hope that it will
be useful, but WITHOUT ANY WARRANTIES, EXPRESS OR IMPLIED (INCLUDING, WITHOUT
LIMITATION, ANY WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR
PURPOSE). You may obtain a copy of the GNU General Public License at
http://www.gnu.org or by requesting a copy from the Free Software Foundation,
Inc., 59 Temple Place- Suite 330, Boston, MA 02111-1307 USA.

Please send me a copy of the "Celera Assembler Software" subject to the terms of
the GNU General Public License, version 2, as published by the Free Software
Foundation.

I have read and agree to the terms of the GNU General Public License, version 2.


PRINT CLEARLY


my name:



my organization:



my address:






my phone number:



my e-mail address:



signature:

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The Celera Assembler Source Code
================================
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software remain in the public domain. For more information, see
http://www.gnu.org/copyleft/gpl.html

To obtain a copy of the source code, subject to the GNU General Public License,
please print the top of this page, fill in the blanks, and FAX it to the
number shown. You will receive a CD by mail. If you have questions about the
form, please send them to [email protected]

Consulting Services

Celera and Applied Biosystems also offer consulting services to laboratories
making use of the whole genome shotgun assembly technique. Send inquiries about
consulting services by e-mail to [email protected]

References

Adams et al. (2000) The Genome Sequence of Drosophila melanogaster. Science 287
2185-2195.
Holt et al. (2002) The Genome Sequence of the Malaria Mosquito Anopheles
gambiae. Science 298 129-149.
Istrail et al. (2004) Whole Genome Shotgun Assembly and Comparison of Human
Genome Assemblies. PNAS 101 1916-1921.
Kirkness et al. (2003) The Dog Genome: Survey Sequencing and Comparative
Analysis. Science 301 1898-1903.
Mural et al. (2002) A Comparison of Whole-Genome Shotgun-Derived Mouse
Chromosome 16 and the Human Genome. Science 296 1661-1671.
Myers et al. (2000) A Whole-Genome Assembly of Drosophila. Science 287 2196-
2204.
Adams et al. (2000) The Genome Sequence of Drosophila melanogaster. Science 287 2185-2195.
Holt et al. (2002) The Genome Sequence of the Malaria Mosquito Anophelesd gambiae. Science 298 129-149.
Istrail et al. (2004) Whole Genome Shotgun Assembly and Comparison of Human Genome Assemblies. PNAS 101 1916-1921.
Kirkness et al. (2003) The Dog Genome: Survey Sequencing and Comparative Analysis. Science 301 1898-1903.
Mural et al. (2002) A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome. Science 296 1661-1671.
Myers et al. (2000) A Whole-Genome Assembly of Drosophila. Science 287 2196-2204.
Venter et al. (2001) The Sequence of the Human Genome. Science 291 1304-1351.



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For the full software distribution, and modifications made under the GNU General
Public License version 2:


This program is free software; you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free Software
Foundation; either version 2 of the License, or (at your option) any later
version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received (LICENSE.txt) a copy of the GNU General Public License
along with this program; if not, write to the Free Software Foundation, Inc., 59
Temple Place, Suite 330, Boston, MA 02111-1307 USA




For modifications made by the Battelle National Biodefense Institute
under the BSD 3-Clause License:


This Software was prepared for the Department of Homeland Security (DHS) by the
Battelle National Biodefense Institute, LLC (BNBI) as part of contract
HSHQDC-07-C-00020 to manage and operate the National Biodefense Analysis and
Countermeasures Center (NBACC), a Federally Funded Research and Development
Center.

Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice, this
list of conditions and the following disclaimer in the documentation and/or
other materials provided with the distribution.

* Neither the name of the Battelle National Biodefense Institute nor the names
of its contributors may be used to endorse or promote products derived from
this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.




For modifications in the public domain:


PUBLIC DOMAIN NOTICE

This software/database is a "United States Government Work" under the terms of
the United States Copyright Act. It was written as part of the author's
official duties as a United States Government employee and thus cannot be
copyrighted. This software/database is freely available to the public for
use. The National Library of Medicine and the U.S. Government have not placed
any restriction on its use or reproduction.

Although all reasonable efforts have been taken to ensure the accuracy and
reliability of the software and data, the NLM and the U.S. Government do not
and cannot warrant the performance or results that may be obtained by using this
software or data. The NLM and the U.S. Government disclaim all warranties,
express or implied, including warranties of performance, merchantability or
fitness for any particular purpose.

Please cite the authors in any work or product based on this material.

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