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Commits on Nov 26, 2015

• Added back GenBank file creation

  nielshanson

  committed
  fc777c2

Commits on Jul 7, 2015

• v2.5.2 release

  nielshanson

  committed
  5b278da

Commits on Jul 4, 2015

• Fixed rRNA DB formatting problem, GenBank input file misses, rpkm calculation from .sam files

  nielshanson

  committed
  81100ea

Commits on Mar 9, 2015

• Fixed bug preventing annotations from gbk files being used.

  nielshanson

  committed
  643826d

Commits on Feb 20, 2015

• Fixed automatic picking up of param and config files, fixed refscore calculation to make independent of BLAST and LAST executables, adjust parse balst file to compute the bitscore internally from a…

  Show description for fe4babe
  kishori82

  committed
  fe4babe

Commits on Feb 5, 2015

• fixed BLAST autoformatting problem and collapsed annotation orfs, pathologic input and report generation

  kishori82

  committed
  140712c

Commits on Dec 8, 2014

• Added the provision for invalid file

  kishori82

  committed
  3d260ba

Commits on Dec 5, 2014

• Fixed to skip samples with incorrect input

  kishori82

  committed
  bda5ac9

Commits on Nov 24, 2014

• Added regtests, upto date binaries, removed MLTreeMap data

  kishori82

  committed
  36473e5

Commits on Nov 5, 2014

• Fixed the file type detection

  kishori82

  committed
  c13e405

Commits on Oct 15, 2014

• changed in PNNL

  kishori82

  committed
  22559e5

Commits on Sep 17, 2014

• Updated WTD code. Still need to format results and integrate with main pipeline code.

  nielshanson

  committed
  a54aa01

Commits on Sep 16, 2014

• Changed after the RPKM changes

  kishori82

  committed
  80bffb5

Commits on Sep 15, 2014

• Added RPKM code.

  kishori82

  committed
  3c5eb57

Commits on Sep 12, 2014

• Updated some of the config files. Texting PyCharm development environment.

  

  nielshanson

  authored and

  nielshanson

  committed
  b5b2deb

Commits on Aug 12, 2014

• Added the MetaPathways_func_search and MetaPathways_tRNA_scan

  

  Kishori Mohan Konwar

  authored and

  Kishori Mohan Konwar

  committed
  7bf3eb3

Commits on Aug 10, 2014

• Chaning the executabales

  

  Kishori Mohan Konwar

  authored and

  Kishori Mohan Konwar

  committed
  22bfbbf

• Added the prodigal script

  

  Kishori Konwar

  committed
  640b16f

Commits on Aug 5, 2014

• Added the MLTReemap

  

  Kishori Konwar

  committed
  ddb80c7

Commits on Jul 15, 2014

• Fixed the Build pgdb issue

  

  Kishori Konwar

  committed
  0cd1cbd

Commits on Jul 7, 2014

• Removed some legacy code and fixed to run multiplse samples bug

  

  Kishori Konwar

  committed
  025e455

Commits on Jul 5, 2014

• Fixed the parse blast to check the loggers are not NoneType

  

  Kishori Konwar

  committed
  dbc6a0e

Commits on Jul 2, 2014

• Fixed code to deal with the selective overwrite

  

  Kishori Konwar

  committed
  96fffbf

Commits on Jul 1, 2014

• added the gbk-annotate and gbk-unannotate

  

  Kishori Konwar

  committed
  ccf1728

Commits on Jun 27, 2014

• Some integration fixes, path names, etc.

  nielshanson

  committed
  1ef492f

Commits on May 17, 2014

• Fixed grid and partial formatting of databases

  

  sgeadmin

  committed
  e9712d0

Commits on May 12, 2014

• Made modifications to include the error handler

  

  sgeadmin

  committed
  14de67b

Commits on Apr 28, 2014

• Added the errorlog and debugged

  

  sgeadmin

  committed
  6cdf8e9

Commits on Apr 23, 2014

• add the gather stats flag and modified print to eprintf

  kishori82

  committed
  bdc8528

Commits on Mar 12, 2014

• sped up the report generation

  kishori82

  committed
  72d3824

Commits on Mar 3, 2014

• fixed the large sample processing bottleneck

  kishori82

  committed
  67f4fbc

Commits on Feb 10, 2014

• runs samples in sorted order

  michaeldubyu

  committed
  1532eb2

Commits on Dec 23, 2013

• fixed edge cases when not running with refseq

  michaeldubyu

  committed
  723b742

Commits on Dec 20, 2013

• ran to end of pipeline

  michaeldubyu

  committed
  45d1bf4

Commits on Dec 18, 2013

• working version of mp2 with up to pipeline stage 13 working

  michaeldubyu

  committed
  78f4dc4

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