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An R package and R Shiny app developed for the calculation of Kansas Department of Health and Environment's (KDHE) macroinvertebrate IBI. Developed by Tetra Tech.
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by …
Phylogenetic maximum representation sampling: choosing most representative strains or taxa
A pipeline for the analysis of Illumina sequence data from Influenza viruses
Real-Time Monitoring of HPAI Detections in One or More Dairy Products in the United States
Hack for Apple's Superdrive to work with other systems than OSX / MacOS and MBA
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.
Consensus sequences for U.S. H5N1 clade 2.3.4.4b
tool to determine optimal refrerence genome given a set of fasta files
Raspberry Pi App Store for Open Source Projects
Reconstruction of transmission trees using genomic data
🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
Datasets for https://github.com/nextstrain/nextclade
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.
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💔 An implementation of scale functions for setting axis breaks of a 'gg' plot.
Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.
garfinjm / HAI-Seq
Forked from eliotstanton/HAI-SeqHAI_QC: Scripts for performing QC on sequencing data prior to upload to NCBI