Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"

An Easy-to-use, Scalable and High-performance RLHF Framework (70B+ PPO Full Tuning & Iterative DPO & LoRA & Mixtral)

An extensible benchmark for evaluating large language models on planning

A language model programming library.

A collection of LLM papers, blogs, and projects, with a focus on OpenAI o1 and reasoning techniques.

Powerful, open, and modular Agentic Framework

Implementation of Switch Transformers from the paper: "Switch Transformers: Scaling to Trillion Parameter Models with Simple and Efficient Sparsity"

Chai-1, SOTA model for biomolecular structure prediction

PlaNet: Predicting population response to drugs via clinical knowledge graph

TAG-Bench: A benchmark for table-augmented generation (TAG)

R package implementation of Milo for testing for differential abundance in KNN graphs

Gorilla: Training and Evaluating LLMs for Function Calls (Tool Calls)

Finetune Llama 3.2, Mistral, Phi & Gemma LLMs 2-5x faster with 80% less memory

LIANA: a LIgand-receptor ANalysis frAmework

DSPy: The framework for programming—not prompting—foundation models

Scripts to download genomes from the NCBI FTP servers

✨✨VITA: Towards Open-Source Interactive Omni Multimodal LLM

Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology

The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

Generative Agents: Interactive Simulacra of Human Behavior

Test project for AI agents

Code for the ICLR 2022 paper "Attention-based interpretability with Concept Transformers"

[NeurIPS 2024] SimPO: Simple Preference Optimization with a Reference-Free Reward

Single-cell disease relevance score (scDRS)

Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design

Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation