This folder contains R codes used for the analysis published in the paper titled 'Risk of transmission and viral shedding from the time of infection for Respiratory Syncytial Virus in households’.
Id: Individual IDs Number: Sequential individual ID. Age: Age group. Onsetday: The date of ARI onset. Endday: The date ARI episode ended. Npax: The number of participants in this model. VLs: Viral loads estimated through PCR. Zero means no specimen. TS: Time elapsed since first sample collection. CS: If the viral loads was less than the censoring threshold, the value is 1. NS; The number of specimen collected.