A simple Ghostscript-based PDF to PDF/A-1B converter.

PDFsam, a desktop application to split, merge, mix, rotate PDF files and extract pages

Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support

Official repo for par2cmdline and libpar2

EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

A tabbed file manager with Add-on support

A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions

Blazing 💥 fast terminal-ui for git written in rust 🦀

A small utility to modify the dynamic linker and RPATH of ELF executables

Module for creating and displaying Toast Notifications on Microsoft Windows 10.

A fast multi-threaded k-mer counter

Code examples of fast and simple k-mer counters for tutorial purposes

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

tandem repeat finding from erroneous long reads

Long read / genome alignment software

Methylated DNA motif discovery tool

Disk encryption with strong security based on TrueCrypt

A python script wrapper for git-archive that archives a git superproject and its submodules, if it has any. Takes into account .gitattributes

Fast algorithm for leverage score sampling, low rank (kernel) matrix factorization and PCA

Windows system utilities to maximize productivity

A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning …

ThunderSVM: A Fast SVM Library on GPUs and CPUs

Large-scale, multi-GPU capable, kernel solver

Global alignment and alignment extension

A fast K-mer counter for high-fidelity shotgun datasets

a long read simulator that can imitate many types of read problems