Nextflow training material

A collection of Korean NLP hands-on labs on Amazon SageMaker

Bash scripts for fastq to vcf pipeline, written for USyd Artemis HPC.

The open source version of the AWS ParallelCluster User Guide.

Sample Kubernetes service used in the EKS Workshop CI/CD CodePipeline module

Connect, secure, control, and observe services.

NGS perl modules

Aggregate results from bioinformatics analyses across many samples into a single report.

Conda recipes for the bioconda channel.

Sequana demultiplexing pipeline

Simple workflow to map WGS data to reference genome according to GATK best practices

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

PoC for CVE-2021-3156 (sudo heap overflow)

Deep Generative Models for Learning Gene Expression Profile Latent Representations from LINCS L1000 data

A cross-platform, GPU-accelerated terminal emulator

Survival Analysis and Visualization

Generative models of chemical data for PaccMann^RL

Tool to extract expression datasets with survival data from the NCBI GEO database for particular cancer types