Hail on AWS EMR Sample

A collection of localized (Korean) AWS AI/ML workshop materials for hands-on labs.

Sample projects on working with AWS HealthImaging, an AWS service that allows you to store, analyze, and share medical images in the cloud at petabyte scale.

A single-cell RNAseq pipeline for 10X genomics data

A modular and comprehensive solution to deploy a Multi-LLM and Multi-RAG powered chatbot (Amazon Bedrock, Anthropic, HuggingFace, OpenAI, Meta, AI21, Cohere) using AWS CDK on AWS

A Java/JNR based FUSE virtual file system client to provide access to authorized EGA files via the EGA Data REST API (v3)

Genomics Workflows on AWS

UltimaGenomics repository for workflows compatible with AWS HealthOmics

An AI-powered threat modeling tool that leverages OpenAI's GPT models to generate threat models for a given application based on the STRIDE methodology.

An open-source toolkit for large-scale genomic analysis

Run Hail using Amazon EMR Serverless

Example code for running Spark and Hive jobs on EMR Serverless.

Cloud-native genomic dataframes and batch computing

This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale analysis and perform interactive queries against a data lake.…

Snakemake 8 profile for running on AWS ParallelCluster with the Slurm scheduler

Workflow to submit genomic data to ARGO RDPC for processing

AWS nextflow workshop for the 19th Korean Genome Organization (KOGO) Winter Symposium (Jan 31. - Feb 1.)

GA4GH WES on AWS HealthOmics enables customers to use GA4GH WES with AWS HealthOmics Workflows. This allows easy migration for GA4GH WES applications to use the computing scale, predictable pricing…

An end-to-end framework for storing, integrating, and analyzing multimodal HCLS data on AWS, using AWS HealthOmics, AWS HealthLake, AWS HealthImaging, Amazon SageMaker, Amazon Athena, Amazon QuickS…

RNA-seq workflow using STAR and DESeq2

Automation for standing up Gen3 commons

AWS lambda for Ensembl VEP