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A comprehensive library for computational molecular biology

Python 736 104 Updated Feb 9, 2025

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

Python 245 49 Updated Jul 27, 2024

The consensus GEM for Saccharomyces cerevisiae

MATLAB 98 47 Updated Nov 25, 2024

bioBakery tools for meta'omic profiling

Shell 269 75 Updated Oct 19, 2024

HyPhy: Hypothesis testing using Phylogenies

HyPhy 227 68 Updated Feb 10, 2025

COBRApy is a package for constraint-based modeling of metabolic networks.

Python 484 216 Updated Jan 8, 2025

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

Python 327 87 Updated Aug 1, 2019

Graph and network visualization using tabular data in R

R 1,704 247 Updated Jan 18, 2025

code for the yeast manuscript

R 1 2 Updated Apr 27, 2018

Data and code for yeast-GEM update

R 2 1 Updated May 16, 2019