Skip to content
View hseabolt's full-sized avatar
  • Leidos contractor for CDC
  • Atlanta, GA

Block or report hseabolt

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
  • parasight Public

    Nextflow pipeline for comparing gene/allele content amongst closely related (microbial eukaryote) genomes.

    Updated Nov 27, 2024
  • tautyping Public

    This pipeline identifies genes or genomic segments which most closely resemble the genome-wide phylogenetic signal of a given organism using the Kendall Tau rank correlation statistic

    Nextflow 2 5 MIT License Updated Mar 9, 2024
  • Pipeline for the identification of (coding) gene structures in draft genomes.

    Nextflow MIT License Updated Mar 1, 2024
  • mycosnp-nf Public

    Forked from CDCgov/mycosnp-nf

    CDCgov/mycosnp-nf

    Nextflow Apache License 2.0 Updated Jan 22, 2024
  • metaXplore Public

    A modular bioinformatics pipeline to conduct basic, rapid data exploration of metagenomic sequencing data at a glance.

    Nextflow 1 MIT License 1 issue needs help Updated Jul 5, 2023
  • phoenix Public

    Forked from CDCgov/phoenix

    🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

    Python 1 Apache License 2.0 Updated May 17, 2023
  • Kolander Public

    highly flexible sequencing read sieve for taxonomic filtering of next-generation sequencing data.

    Groovy MIT License Updated Mar 17, 2023
  • Repo for CSE8803 course project covering extensions to vectorborne disease compartment models

    Jupyter Notebook MIT License Updated Dec 1, 2022
  • modules Public

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow MIT License Updated Jun 2, 2022
  • rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow MIT License Updated Apr 16, 2022
  • viralrecon Public

    Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow MIT License Updated Mar 24, 2022
  • Conda recipes for the bioconda channel.

    Shell Updated Mar 23, 2022
  • Gibbs Public

    A Perl module implementing a Gibbs sampler

    Perl MIT License Updated Mar 23, 2022
  • Markov Public

    A Perl implementation of discrete-time Markov chains

    Perl MIT License Updated Feb 25, 2022
  • HMM Public

    A Perl implementation of Hidden Markov Models

    Perl MIT License Updated Feb 25, 2022
  • Perl implementations of various common probability distributions for data science

    Perl MIT License Updated Feb 17, 2022
  • nexus_utils Public

    A collection of homebrew scripts for operating on Nexus-formatted biological sequence data

    Perl 1 MIT License Updated Feb 17, 2022
  • KmerTK Public

    A collection of bioinformatics scripts for operating with sets of k-mers derived from genome sequences.

    Perl MIT License Updated Feb 17, 2022
  • A command-line set of power tools for matrix operations, including data munging, resampling, statistics, information content, and linear algebra.

    Perl MIT License Updated Feb 17, 2022
  • MLST Public

    A Perl module for multilocus sequence typing applications (MLST)

    Perl MIT License Updated Feb 17, 2022
  • Perl tools for information theory application and calculations

    Perl MIT License Updated Feb 17, 2022
  • rankGenes Public

    An old workflow for identifying genes whose phylogenetic signal closely matches that of WGS

    Updated Feb 17, 2022