hseabolt
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parasight Public
Nextflow pipeline for comparing gene/allele content amongst closely related (microbial eukaryote) genomes.
UpdatedNov 27, 2024 -
tautyping Public
This pipeline identifies genes or genomic segments which most closely resemble the genome-wide phylogenetic signal of a given organism using the Kendall Tau rank correlation statistic
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genomeannotator Public
Forked from nf-core/genomeannotatorPipeline for the identification of (coding) gene structures in draft genomes.
Nextflow MIT License UpdatedMar 1, 2024 -
mycosnp-nf Public
Forked from CDCgov/mycosnp-nfCDCgov/mycosnp-nf
Nextflow Apache License 2.0 UpdatedJan 22, 2024 -
metaXplore Public
A modular bioinformatics pipeline to conduct basic, rapid data exploration of metagenomic sequencing data at a glance.
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phoenix Public
Forked from CDCgov/phoenix🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
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Kolander Public
highly flexible sequencing read sieve for taxonomic filtering of next-generation sequencing data.
Groovy MIT License UpdatedMar 17, 2023 -
vectorborne_SIR Public
Repo for CSE8803 course project covering extensions to vectorborne disease compartment models
Jupyter Notebook MIT License UpdatedDec 1, 2022 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedJun 2, 2022 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedApr 16, 2022 -
viralrecon Public
Forked from nf-core/viralreconAssembly and intrahost/low-frequency variant calling for viral samples
Nextflow MIT License UpdatedMar 24, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedMar 23, 2022 -
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Markov Public
A Perl implementation of discrete-time Markov chains
Perl MIT License UpdatedFeb 25, 2022 -
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ProbabilityDistributions Public
Perl implementations of various common probability distributions for data science
Perl MIT License UpdatedFeb 17, 2022 -
nexus_utils Public
A collection of homebrew scripts for operating on Nexus-formatted biological sequence data
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KmerTK Public
A collection of bioinformatics scripts for operating with sets of k-mers derived from genome sequences.
Perl MIT License UpdatedFeb 17, 2022 -
matrix_power_tools Public
A command-line set of power tools for matrix operations, including data munging, resampling, statistics, information content, and linear algebra.
Perl MIT License UpdatedFeb 17, 2022 -
MLST Public
A Perl module for multilocus sequence typing applications (MLST)
Perl MIT License UpdatedFeb 17, 2022 -
InformationTheory Public
Perl tools for information theory application and calculations
Perl MIT License UpdatedFeb 17, 2022 -
rankGenes Public
An old workflow for identifying genes whose phylogenetic signal closely matches that of WGS
UpdatedFeb 17, 2022