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Species

Kevin S edited this page Aug 31, 2017 · 1 revision

Metazoa

Species (genome version)	Common Name	KEGG
Loxodonta africana (loxAfr3)	African savanna elephant	lav
Saccharomyces cerevisiae (R64-1-1)	budding yeast	sce
Gallus gallus (Gallus_gallus-5.0)	chicken	gga
Pan troglodytes (CHIMP2.1.4)	chimpanzee	ptr
Pelodiscus sinensis (PelSin_1.0)	Chinese soft-shelled turtle	pss
Latimeria chalumnae (LatCha1)	coelacanth	lcm
Ficedula albicollis (FicAlb_1.4)	collared flycatcher	fab
Bos taurus (UMD3.1)	cow	bta
Canis familiaris (CanFam3.1)	dog	cfa
Felis catus (Felis_catus_6.2)	domestic cat	fca
Drosophila melanogaster (BDGP6)	fruit fly	dme
Ailuropoda melanoleuca (ailMel1)	giant panda	aml
Anolis carolinensis (AnoCar2.0)	green anole	acs
Chlorocebus sabaeus (ChlSab1.1)	green monkey	csab
Equus caballus (EquCab2)	horse	ecb
Homo sapiens (GRCh38.p7)	human	hsa
Oryzias latipes (MEDAKA1)	Japanese medaka	ola
Anas platyrhynchos (BGI_duck_1.0)	mallard	apla
Mus musculus (GRCm38.p4)	mouse	mmu
Caenorhabditis elegans (WBcel235)	nematode	cel
Nomascus leucogenys (Nleu1.0)	northern white-cheeked gibbon	nle
Monodelphis domestica (BROADO5)	opossum	mdo
Sus scrofa (Sscrofa10.2)	pig	ssc
Ornithorhynchus anatinus (OANA5)	platypus	oaa
Oryctolagus cuniculus (OryCun2.0)	rabbit	ocu
Rattus norvegicus (Rnor_6.0)	rat	rno
Macaca mulatta (Mmul_8.0.1)	rhesus monkey	mcc
Ciona intestinalis (KH)	sea squirt	cin
Ovis aries (Oar_v3.1)	sheep	oas
Xiphophorus maculatus (Xipmac4.4.2)	southern platyfish	xma
Tetraodon nigroviridis (TETRAODON8)	spotted green pufferfish	tng
Pongo abelii (PPYG2)	Sumatran orangutan	pon
Sarcophilus harrisii (DEVIL7.0)	Tasmanian devil	shr
Takifugu rubripes (FUGU4)	torafugu	tru
Meleagris gallopavo (UMD2)	turkey	mgp
Xenopus tropicalis (JGI_4.2)	western clawed frog	xtr
Gorilla gorilla (gorGor3.1)	western lowland gorilla	ggo
Callithrix jacchus (C_jacchus3.2.1)	white-tufted-ear marmoset	cjc
Taeniopygia guttata (taeGut3.2.4)	zebra finch	tgu
Danio rerio (GRCz10)	zebrafish	dre
Cavia porcellus (cavPor3)		
Gasterosteus aculeatus (BROADS1)		
Ictidomys tridecemlineatus (spetri2)		
Choloepus hoffmanni (choHof1)		
Ciona savignyi (CSAV2.0)		
Tursiops truncatus (turTru1)		
Oreochromis niloticus (Orenil1.0)		
Astyanax mexicanus (AstMex102)		
Petromyzon marinus (Pmarinus_7.0)		
Erinaceus europaeus (HEDGEHOG)		
Echinops telfairi (TENREC)		
Dasypus novemcinctus (Dasnov3.0)		
Procavia capensis (proCap1)		
Myotis lucifugus (Myoluc2.0)		
Poecilia formosa (PoeFor_5.1.2)		
Tupaia belangeri (TREESHREW)		
Mustela putorius furo (MusPutFur1.0)		
Pteropus vampyrus (pteVam1)		
Papio anubis (PapAnu2.0)		
Vicugna pacos (vicPac1)		
Tarsius syrichta (tarSyr1)		
Otolemur garnettii (OtoGar3)		
Microcebus murinus (Mmur_2.0)		
Lepisosteus oculatus (LepOcu1)		
Ochotona princeps (pika)		
Dipodomys ordii (dipOrd1)		
Gadus morhua (gadMor1)		
Sorex araneus (COMMON_SHREW1)		
Macropus eugenii (Meug_1.0)		
Plants

Species (genome version)	Common Name	KEGG
Medicago truncatula (MedtrA17_4.0)	barrel medic	mtr
Populus trichocarpa (JGI2.0)	black cottonwood	pop
Theobroma cacao (Theobroma_cacao_20110822)	cacao	tcc
Brassica rapa (IVFCAASv1)	field mustard	brp
Setaria italica (JGIv2.0)	foxtail millet	sita
Oryza sativa Japonica (IRGSP-1.0)	Japanese rice	osa
Arabidopsis lyrata (v.1.0)	lyrate rockcress	aly
Zea mays (AGPv4)	maize	zma
Oryza brachyantha (Oryza_brachyantha.v1.4b)	malo sina	obr
Prunus persica (Prupe1_0)	peach	pper
Solanum tuberosum (SolTub_3.0)	potato	sot
Brassica napus (AST_PRJEB5043_v1)	rape	bna
Sorghum bicolor (Sorbi1)	sorghum	sbi
Glycine max (V1.0)	soybean	gmx
Arabidopsis thaliana (TAIR10)	thale cress	ath
Solanum lycopersicum (SL2.50)	tomato	sly
Aegilops tauschii (ASM34733v1)	wheat D	ats
Brassica oleracea (v2.1)	wild cabbage	boe
Musa acuminata (MA1)	wild Malaysian banana	mus
Vitis vinifera (IGGP_12x)	wine grape	vvi
Oryza nivara (AWHD00000000)		
Physcomitrella patens (ASM242v1)		ppp
Leersia perrieri (Lperr_V1.4)		
Brachypodium distachyon (v1.0)		bdi
Oryza punctata (AVCL00000000)		
Oryza sativa Indica (ASM465v1)		
Selaginella moellendorffii (v1.0)		smo
Oryza glumaepatula (ALNU02000000)		
Oryza barthii (O.barthii_v1)		
Ostreococcus lucimarinus (ASM9206v1)		olu
Hordeum vulgare (ASM32608v1)		
Oryza meridionalis (Oryza_meridionalis_v1.3)		
Oryza rufipogon (OR_W1943)		
Triticum aestivum (TGACv1)		
Amborella trichopoda (AMTR1.0)		atr
Beta vulgaris subsp. vulgaris (RefBeet-1.2.2)		
Chlamydomonas reinhardtii (v3.1)		cre
Oryza longistaminata (O_longistaminata_v1.0)		
Trifolium pratense (Trpr)		
Cyanidioschyzon merolae (ASM9120v1)		cme
Oryza glaberrima (AGI1.1)		
Triticum urartu (ASM34745v1)
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