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Merge pull request colomemaria#127 from colomemaria/add_fns
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Add fns tutorial
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Anna Danese authored Nov 17, 2022
2 parents 1d41a34 + c27dd61 commit 3bb21ee
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Showing 11 changed files with 1,377 additions and 254 deletions.
4 changes: 2 additions & 2 deletions episcanpy/count_matrix/__init__.py
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import platform
if platform.system() != "Windows":
#Note pysam doesn't support Windows
from ..count_matrix._bld_atac_mtx import bld_mtx_fly
from ..count_matrix._bld_atac_mtx import bld_mtx_fly, peak_mtx, gene_activity_mtx, window_mtx
from ..count_matrix._bld_atac_mtx_parallel import bld_mtx_bed, bld_mtx_bed_per_chr
#from ..count_matrix._bld_atac_mtx_parallel import bld_mtx_bed, as build_matrix

#from ..count_matrix._bld_met_mtx import methylation_level, write_not_sparse_meth, extract_methylation, extract_feature_names
#from ..count_matrix._bld_met_mtx import read_meth_fileCG, read_meth_fileCH, read_meth_file, filter_and_average_features
#from ..count_matrix._bld_met_mtx import filter_and_average_features_chrm, prep_methlevels, write_list, write_methlevel
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