Gene activity speed up using intervall tree

idriskb · Jan 26, 2022 · 6cb32fa · 6cb32fa
1 parent 2bfe870
commit 6cb32fa
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/environment.yml b/environment.yml
@@ -5,7 +5,6 @@ channels:
     - defaults
 dependencies:
     - python<3.8
-    - intervaltree
     - anndata>=0.7
     - scanpy>=1.5.1
     - importlib_metadata>=0.7
@@ -29,3 +28,5 @@ dependencies:
     - legacy-api-wrap
     - setuptools_scm
     - packaging
+    - pip:
+        - intervaltree
diff --git a/requirements.txt b/requirements.txt
@@ -1,6 +1,7 @@
 anndata>=0.7
 scanpy>=1.7.0
 importlib_metadata>=0.7; python_version < '3.8'
+intervaltree
 matplotlib>=3.1.2
 pandas>=0.21
 scipy>=1.4
@@ -21,4 +22,4 @@ legacy-api-wrap
 setuptools_scm
 packaging
 pysam; platform_system != "Windows"
-h5py
+h5py