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|Docs| |PyPI| |bioconda| | ||
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.. |Docs| image:: https://readthedocs.com/projects/icb-scanpy/badge/?version=latest | ||
:target: https://episcanpy.readthedocs.io/en/latest/ | ||
.. |PyPI| image:: https://img.shields.io/pypi/v/episcanpy.svg | ||
:target: https://pypi.org/project/episcanpy | ||
.. |bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square | ||
:target: http://bioconda.github.io/recipes/episcanpy/README.html | ||
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Episcanpy – Epigenomics single cell analysis in python | ||
============================================ | ||
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**Episcanpy** is a toolkit to analyse single cell chromatin (ATACseq) and methylation (BSseq) data. | ||
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It is compatible with scanpy_ (`Wolf et al., 2018 <https://doi.org/10.1186/s13059-017-1382-0>`_). Making use of sparse | ||
implementation, iterative neighbors search and other techniques (these 2 sentences come from the rna velocity readme) | ||
It is based on scanpy implementation and compatible and with it (`Wolf et al., 2018 <https://doi.org/10.1186/s13059-017-1382-0>`_). | ||
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The documentation of Episcanpy is available at <https://episcanpy.readthedocs.io/en/latest/> | ||
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We are still working on pip install procedure, it should be available soon | ||
We are still working on pip install procedure, the documentation and loading a stable version of episcanpy to release. | ||
Everything will get available as soon as possible. |
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