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DaneseAnna committed Mar 29, 2019
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include requirements.txt
include episcanpy/_version.py
include episcanpy/*/*.txt
include LICENSE.txt
include README.rst
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|Docs| |PyPI| |bioconda|


.. |Docs| image:: https://readthedocs.com/projects/icb-scanpy/badge/?version=latest
:target: https://episcanpy.readthedocs.io/en/latest/
.. |PyPI| image:: https://img.shields.io/pypi/v/episcanpy.svg
:target: https://pypi.org/project/episcanpy
.. |bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square
:target: http://bioconda.github.io/recipes/episcanpy/README.html


Episcanpy – Epigenomics single cell analysis in python
============================================

**Episcanpy** is a toolkit to analyse single cell chromatin (ATACseq) and methylation (BSseq) data.

It is compatible with scanpy_ (`Wolf et al., 2018 <https://doi.org/10.1186/s13059-017-1382-0>`_). Making use of sparse
implementation, iterative neighbors search and other techniques (these 2 sentences come from the rna velocity readme)
It is based on scanpy implementation and compatible and with it (`Wolf et al., 2018 <https://doi.org/10.1186/s13059-017-1382-0>`_).

The documentation of Episcanpy is available at <https://episcanpy.readthedocs.io/en/latest/>

We are still working on pip install procedure, it should be available soon
We are still working on pip install procedure, the documentation and loading a stable version of episcanpy to release.
Everything will get available as soon as possible.
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