A community version of the renowned "Learn You a Haskell" (LYAH) tutorials collection!

The list of continuous integration services and tools

Functional highly reproducible bioinformatics pipelines

Nextflow pipeline to process long read ONT and/or pacbio HiFi data

A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.

Demo of several webR usages

Bartosz Milewski's 'Category Theory for Programmers' unofficial PDF and LaTeX source

A collection of Nix flake templates for adding a reproducible environment quickly

Solutions to exercises in Haskell Programming from first principles

batteries-included nix-based haskell project template

ShellCheck, a static analysis tool for shell scripts

Self-hosted GitHub Actions runner on GCP using GCE.

An interactive explorer for single-cell transcriptomics data

cBioPortal for Cancer Genomics

Resource Entitlement Management System is a tool for managing access rights to resources, such as research datasets.

Fully automated homelab from empty disk to running services with a single command.

Kinesis Advantage2 remapping helper

Framework for image and flow cytometry analysis

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

age-encrypted secrets for NixOS and Home manager

General purpose Nix configuration for macOS / NixOS (with starter templates!)

DevOps Tutorials

State of the art fluorescence lifetime imaging analysis software

Specification for storing geospatial vector data (point, line, polygon) in Parquet

Host repository for The Turing Way: a how to guide for reproducible data science

A simple, high-throughput file client for mounting an Amazon S3 bucket as a local file system.

Python package for automatic tree crown delineation based on the Detectron2 implementation of Mask R-CNN

Deploying an Ubuntu VM in Azure using Terraform