GREP: Genome for REPositioning drugs

methods for functional summary-based imputation

phenoscanner allows users to query the PhenoScanner database of genotype-phenotype associations from inside R

Software implementing the Latent Causal Variable Model

Scripts for the Reay et al. GWAS of circulating retinol

A package for running MR In batches and in parallel quickly

GWAS summary statistics files QC tool

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

Harmonise GWAS summary statistics against a reference VCF

GWAS Summary Statistics Data Harmonisation

CELLECT (CELL-type Expression-specific integration for Complex Traits)

LD Score Regression (LDSC)

High-definition likelihood inference of genetic correlations (HDL)

Codes for our NPNT paper at Nature Metabolism

Data objects for various sets of instruments

R package for performing 2-sample MR using MR-Base database

a python package for KEGG pathway enrichment analysis with multiple gene lists.

Python library to facilitate genome assembly, annotation, and comparative genomics

Python library to handle Gene Ontology (GO) terms

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

The PheWAS R package

Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

A companion R package for the MicrobiomeAnalyst web server

tidymass

MACS -- Model-based Analysis of ChIP-Seq