Set a default bucket size for the read length histogram. Issue marbl#436

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irares · Apr 3, 2017 · 0efa80e · 0efa80e
1 parent fb75616
commit 0efa80e
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/src/pipelines/canu/Gatekeeper.pm b/src/pipelines/canu/Gatekeeper.pm
@@ -357,6 +357,8 @@ sub gatekeeperGenerateReadLengths ($$) {
         $bucketSize = 1000;
     } elsif ($maxLen - $minLen < 1000000) {
         $bucketSize = 5000;
+    } else {
+        $bucketSize = 10000;
     }
 
     #  Generate the histogram (int truncates)