Run './alignGFA.sh' for small jobs, not just 'alignGFA.sh'.

irares · Apr 11, 2017 · c54b7af · c54b7af
1 parent 15d868c
commit c54b7af
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/pipelines/canu/Consensus.pm b/src/pipelines/canu/Consensus.pm
@@ -668,7 +668,7 @@ sub alignGFA ($) {
     emitStage($asm, "alignGFA", $attempt);
 
     if (getGlobal("genomeSize") < 40000000) {
-        if (runCommand("$path", "alignGFA.sh")) {
+        if (runCommand("$path", "./alignGFA.sh")) {
             caExit("failed to align contigs", "./$asm.contigs.aligned.gfa.err");
         }
     } else {