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Commits on Aug 18, 2017

• Fix parameters for early Nanopore data.

  brianwalenz

  committed
  9e1af2e

Commits on Aug 14, 2017

• Bump version to 1.6.

  brianwalenz

  committed
  78d0188

• Update for the last copyright update.

  brianwalenz

  committed
  54b4bec

• Update copyright info.

  brianwalenz

  committed
  9e9bd67

• Remove whitespace on blank line.

  brianwalenz

  committed
  b2c2c91

• Remove whitespace at end of lines.

  brianwalenz

  committed
  ddf4768

• Remove whitespace on blank line.

  brianwalenz

  committed
  8578316

• Remove whitespace on blank line.

  brianwalenz

  committed
  229187a

• Remove whitespace on blank line.

  brianwalenz

  committed
  4b75dde

• Remove whitespace at end of lines.

  brianwalenz

  committed
  aed7b50

Commits on Aug 11, 2017

• Fix paths to remove .cns files and ctgcns/utgcns directories.

  brianwalenz

  committed
  8f83b2f

• Disable logging of subreads, very big and not useful.

  brianwalenz

  committed
  1710d6d

Commits on Aug 10, 2017

• Switch to pre-allocated array instead of vector, and use inplace sort, to prevent memory spikes during errorProfile computation.

  brianwalenz

  committed
  3392d75

• Reserve 25% of memory for computing.

  brianwalenz

  committed
  d80d001

• Add reportErrorProfiles() for repeats.

  brianwalenz

  committed
  b2ef408

• Add functions to return wall and cpu time.

  brianwalenz

  committed
  1ab6f3c

Commits on Aug 9, 2017

• Suggest random sampling for plasmids. Issue marbl#583.

  brianwalenz

  committed
  5560ddc

• Put single-quotes around filenames before popen(). Issue marbl#588.

  brianwalenz

  committed
  eea5884

• Tidy up logging a tiny bit.

  brianwalenz

  committed
  65aa996

Commits on Aug 8, 2017

• Remove old bubble popping code but keep orphan popping. Fix issue where orphan popped into orphan that had already been popped.

  brianwalenz

  committed
  47785aa

• Directly store mean and stddev in errorProfile; slightly reduces memory requirement.

  brianwalenz

  committed
  8873a02

• Move epOlapDat.

  brianwalenz

  committed
  44962c4

• Close log files, set threads to 1, before cleaning up.

  brianwalenz

  committed
  e6d2f41

• Trim the quick start, move stuff to tutorial, fix out of date stuff.

  brianwalenz

  committed
  666154a

• Don't allow ovsMethod=parallel when not on grid. Issue marbl#580.

  brianwalenz

  committed
  046048c

• ID's are unsigned.

  brianwalenz

  committed
  70e39b6

• Add corOutCoverage=all, where all is 9999.

  brianwalenz

  committed
  fb47d4a

Commits on Aug 4, 2017

• Add comment about which reads can overlap which reads.

  brianwalenz

  committed
  7d4c241

Commits on Aug 2, 2017

• Expand command line usage, add missing options in -options, tidy up how options are defined in the code. Issue marbl#557.

  brianwalenz

  committed
  9bd2dc4

• Remove obsolete and deprecated errorRate support.

  brianwalenz

  committed
  49080da

• Fix insignificant typo.

  brianwalenz

  committed
  b8ef76c

• Have at least 2 blocks, always.

  brianwalenz

  committed
  f993d36

• Fix error deciding ordering of two storage locations; resulted in occasional crash at storage block boundaries.

  brianwalenz

  committed
  a2ba3e4

Commits on Jul 31, 2017

• Update README.md

  skoren

  authored
  0ef11bf

• Merge pull request marbl#571 from hartzell/patch-1

  Show description for 7598417
  skoren

  authored
  7598417

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