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CASGAP : Computational Approach for Structure Generation of Anisotropic Particles

Python 1 Updated Mar 21, 2024

Python API for the extended tight binding program package

Python 106 31 Updated Sep 3, 2024

Martini 3 small-molecule database

Shell 56 11 Updated Aug 21, 2024

Automated bonded parameters for Martini 3

Go 16 Updated Nov 16, 2024

Build coarse-grained mapping for molecules from a web-GUI

JavaScript 12 5 Updated Sep 10, 2021

A hierarchical, component based molecule builder

Python 177 81 Updated Jan 7, 2025

Describe and apply transformation on molecular structures and topologies

Python 105 46 Updated Jan 10, 2025

Gromacs to Lammps simulation converter

Python 72 20 Updated Dec 9, 2023
Python 9 9 Updated Apr 16, 2021

Antechamber plugin to foyer and support for the GAFF forcefield

Python 7 7 Updated Jun 25, 2020

The Block Copolymer Phase Behavior Database (BCDB)

Python 17 4 Updated Mar 1, 2024

A benchmark dataset for polymer informatics.

58 8 Updated May 31, 2021

A conda-smithy repository for packmol.

Shell 2 9 Updated Nov 6, 2024

More efficient and faster version of pyscal

Jupyter Notebook 21 1 Updated Sep 4, 2024

Force fields produced by the Open Force Field Initiative

Python 141 24 Updated Jan 7, 2025

The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io

Python 322 93 Updated Jan 7, 2025

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Python 1,352 664 Updated Jan 10, 2025
Python 109 26 Updated Sep 11, 2024

Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.

Python 62 9 Updated Dec 17, 2024

Conversion tool for molecular simulations

Python 192 55 Updated Jun 12, 2024

Extensible Surrogate Potential of Ab initio Learned and Optimized by Message-passing Algorithm 🍹https://arxiv.org/abs/2010.01196

Python 219 26 Updated Nov 18, 2024

An interactive structure viewer alongside its simulated diffraction pattern

Python 18 11 Updated Oct 7, 2024

Parameter/topology editor and molecular simulator

Python 402 149 Updated Oct 30, 2024

A package for atom-typing as well as applying and disseminating forcefields

Python 122 78 Updated Jan 7, 2025
Jupyter Notebook 5 3 Updated Jul 15, 2024

An opinionated list of awesome Python frameworks, libraries, software and resources.

Python 230,058 25,109 Updated Aug 11, 2024