GridMAT-MD: A Grid-Based Membrane Analysis Tool for Use With Molecular Dynamics

This is the repository for GridMAT-MD, a Perl script that processes the coordinates of a membrane protein system and computes membrane properties such as thickness and area per lipid.

List of Authors

• William J. Allen, TACC Life Sciences Computing Group, Houston, TX, USA
• Justin A. Lemkul, Virginia Tech, Blacksburg, VA, USA
• David R. Bevan, Virginia Tech, Blacksburg, VA, USA

List of Contributors

• William J. Allen
• Justin A. Lemkul
• David R. Bevan

List of Released Versions

• v2.0: Several bug fixes and greater flexibility in file naming and output format
• v1.0.2: Added conversion script for compatibility with Gnuplot
• v1.0.1: Added compatibility with PDB files
• v1.0: Original version available from Bevan Lab website

Changelog

Citation

If you use GridMAT-MD in your research, we ask that you cite the following article:

W.J. Allen, J.A. Lemkul, and D.R. Bevan (2009) "GridMAT-MD: A Grid-Based Membrane Analysis Tool for Use With Molecular Dynamics" J. Comput. Chem. 30 (12): 1952-1958.