bioinformd

The goal of bioinformd is to generate R Markdown (RMD) files for bioinformatic workflows.

Installation

You can install from GitHub with:

# install.packages("devtools")
devtools::install_github("jdreyf/bioinformd")

Example usage

bioinfo_rmd_contrasts(filename="new_analysis", input.files = c("counts.csv", "pheno.csv"), contr.v='c(treat="treat-control")')