This repository provides Python implementations for Non-negative Matrix Factorization (NMF) using the Multiplicative Update (MU) algorithm. Two initialization methods are supported: random initiali…

Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner

中国科学院大学2022秋季学期算法设计与分析理论课/研讨课-卜东波、张家琳

R package for integrating and analyzing multiple single-cell datasets

Tools to analyze Dip-C (or other 3C/Hi-C) data

Computational pipeline for calling consensi on R2C2 nanopore data

Various scripts for sequencing data analysis

DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.

Deep probabilistic analysis of single-cell and spatial omics data

Quality control for MinION sequencing data

Platform to experiment with the AI Software Engineer. Terminal based. NOTE: Very different from https://gptengineer.app

Scripts and programs for the Holt Lab's MinION desktop

Single Cell Cluster Evaluation

Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

CLI tool for flexible and fast adaptive sampling on ONT sequencers

scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

Raw nanopore signal mapper that enables real-time targeted sequencing

Read Until client library for Nanopore Sequencing

The complete sequence of a human genome

R statistical toolbox for metabolomics

Code for QC, feature extraction, and visualization of daily patient audio diaries

Data and code behind the articles and graphics at FiveThirtyEight

CS 61 problem sets for 2020

CS61 lecture material