ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure prediction, prediction of mutational effects to protein ligand i…

Fast, gene-specific joint humanisation of antibody heavy and light chains.

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Software layer of the EESSI project

Protein Structure Analysis

Listing of papers about machine learning for proteins.

Comprehensive benchmarking of protein-ligand structure generation methods (ICML 2024 AI4Science)

Stanford NLP Python Library for Understanding and Improving PyTorch Models via Interventions

A list of manuscripts/tools using diffusion on biological enttieis

Message Passing Neural Networks for Molecule Property Prediction

A curated list of resources about generative flow networks (GFlowNets).

Source code and examples for AlphaFold Unmasked

A modular, easy to extend GFlowNet library

OpenAssistant is a chat-based assistant that understands tasks, can interact with third-party systems, and retrieve information dynamically to do so.