ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

a short-read polishing tool for long-read assemblies

A tool for generating consensus long-read assemblies for bacterial genomes

a tool to filter sites in a FASTA-format whole-genome pseudo-alignment

More scalable dereplication for metagenome assembled genomes

a tool for counting dead ends in GFA assembly graphs

Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.