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a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
DFAST Quality Control: Taxonomy and completeness check
A tool for generating consensus long-read assemblies for bacterial genomes
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
a python library that exposes features from iqtree2 - efficient software for phylogenomic inference
MMseqs2: ultra fast and sensitive search and clustering suite
Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
Improved Inference of Ortholog Groups using Hidden Markov Models
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
Protein function prediction in bacteria using genomic context
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
MITObim - mitochondrial baiting and iterative mapping
A set of free MIT-licensed high-quality SVG icons for UI development.
Simply beautiful open-source icons
Icons and pictograms that are 100% free and in public domain
Official repository for the Boltz-1 biomolecular interaction model
A method to improve mappings on circular genomes, using the BWA mapper
Simple scripts for circularizing alignments to a linear reference
Open source implementation of AlphaFold3
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集