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Closes: https://bugs.gentoo.org/930652 Signed-off-by: David Seifert <[email protected]>
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DIST R-4.3.1.tar.gz 34899964 BLAKE2B 7aaacad01ce59e2faa46c4b830c10d2df8e4a3a1d4f11cf2aa622ceb53876f1e702dff94a820ca954ec29f53d58fa7e135ef15e8257602c50f2642b0a0c0a86a SHA512 f571c378dbdd675e267ef4419bb1141198924dadc08297c93c8dff58504994604918b3e045bb7139ba473972a063a68ed1c7426f37d4e8208b79358561d34d77 | ||
DIST R-4.3.2.tar.gz 35039225 BLAKE2B 2de3af9013c8648c118a1efe673b618aef84a694c6865657faef5b0ca5f780ef5273bb00b607f587219ee30a11f01ccc3b730b9124847242b9d9550de471f58c SHA512 125114357f20d4a3248aee86727768d1dc15e07e44353f8a68fe2ef1fedae508e85d944301d00c0edd61e8b012b0b3cdcde53ac60be903713f96542d83ad5b1d | ||
DIST R-4.4.1.tar.gz 37353459 BLAKE2B 2c44fcab719cc2a2cef4566fd4e6c22386f02827a41045ffa074ca2a6883089275354644bce47c9978ef5c96e7b9b21576e946500746c27dc00946ef3cde4fce SHA512 cc30172227b7d89a9d6e9d65c8622b2042bcbbf3f1b5e36c7460f60958a1a0589980a1867ec9989df2589c1618233f3382d4732700b147361ace3be6680b5643 | ||
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06 |
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# Copyright 1999-2024 Gentoo Authors | ||
# Distributed under the terms of the GNU General Public License v2 | ||
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EAPI=8 | ||
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inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs | ||
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# latest git commit for R bash completion: | ||
# https://github.com/deepayan/rcompletion | ||
BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6 | ||
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DESCRIPTION="Language and environment for statistical computing and graphics" | ||
HOMEPAGE="https://www.r-project.org/" | ||
SRC_URI=" | ||
https://cran.r-project.org/src/base/R-4/${P}.tar.gz | ||
https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion" | ||
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LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" | ||
SLOT="0" | ||
KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos" | ||
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X" | ||
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REQUIRED_USE=" | ||
png? ( || ( cairo X ) ) | ||
jpeg? ( || ( cairo X ) ) | ||
tiff? ( || ( cairo X ) )" | ||
RESTRICT=" | ||
minimal? ( test ) | ||
!test? ( test )" | ||
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# At least one package installation in the test suite requires TeX, | ||
# and will fail without it (bug #718056). | ||
DEPEND=" | ||
app-arch/bzip2 | ||
app-arch/xz-utils | ||
app-text/ghostscript-gpl | ||
dev-libs/libpcre2:= | ||
>=dev-libs/tre-0.8.0_p20210321[approx] | ||
net-misc/curl | ||
virtual/blas | ||
sys-libs/zlib[minizip] | ||
sys-apps/coreutils | ||
cairo? ( | ||
x11-libs/cairo:=[X=] | ||
x11-libs/pango:= | ||
) | ||
icu? ( dev-libs/icu:= ) | ||
jpeg? ( media-libs/libjpeg-turbo:= ) | ||
kernel_linux? ( net-libs/libtirpc ) | ||
lapack? ( virtual/lapack ) | ||
perl? ( dev-lang/perl ) | ||
png? ( media-libs/libpng:= ) | ||
readline? ( sys-libs/readline:= ) | ||
tiff? ( media-libs/tiff:= ) | ||
tk? ( dev-lang/tk:= ) | ||
X? ( | ||
x11-libs/libXmu | ||
x11-libs/libXt | ||
)" | ||
RDEPEND="${DEPEND} | ||
java? ( >=virtual/jre-1.8:* )" | ||
BDEPEND=" | ||
sys-apps/which | ||
virtual/pkgconfig | ||
doc? ( | ||
virtual/latex-base | ||
dev-texlive/texlive-fontsrecommended | ||
) | ||
test? ( virtual/latex-base )" | ||
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PATCHES=( | ||
"${FILESDIR}"/R-4.3.0-parallel.patch | ||
"${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch | ||
"${FILESDIR}"/R-4.3.0-no-gzip-doc.patch | ||
) | ||
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# false positive, the linking step fails (as it should) | ||
QA_CONFIG_IMPL_DECL_SKIP=( iconvlist ) | ||
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pkg_pretend() { | ||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp | ||
} | ||
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pkg_setup() { | ||
if [[ ${MERGE_TYPE} != binary ]] && use openmp; then | ||
tc-check-openmp | ||
FORTRAN_NEED_OPENMP=1 | ||
fi | ||
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fortran-2_pkg_setup | ||
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# avoid using existing R installation | ||
unset R_HOME | ||
} | ||
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src_prepare() { | ||
default | ||
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# fix packages.html for doc (gentoo bug #205103) | ||
sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ | ||
-i src/library/tools/R/Rd.R || die | ||
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# fix Rscript path when installed (gentoo bug #221061) | ||
sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \ | ||
-i src/unix/Makefile.in || die "sed unix Makefile failed" | ||
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# fix HTML links to manual (gentoo bug #273957) | ||
sed -e 's:\.\./manual/:manual/:g' \ | ||
-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" | ||
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use lapack && | ||
export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" | ||
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use perl && | ||
export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" | ||
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# don't search /usr/local | ||
sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die | ||
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# Fix for Darwin (macOS) | ||
if use prefix; then | ||
if [[ ${CHOST} == *-darwin* ]] ; then | ||
sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ | ||
-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ | ||
-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ | ||
-e "/SHLIB_EXT/s/\.so/.dylib/" \ | ||
-i configure.ac || die | ||
# sort of "undo" 2.14.1-rmath-shared.patch | ||
sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \ | ||
-i src/nmath/standalone/Makefile.in || die | ||
else | ||
append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib" | ||
fi | ||
fi | ||
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AT_M4DIR=m4 eautoreconf | ||
} | ||
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src_configure() { | ||
filter-ldflags -Wl,-Bdirect -Bdirect | ||
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econf \ | ||
--enable-byte-compiled-packages \ | ||
--enable-R-shlib \ | ||
--disable-R-framework \ | ||
--disable-R-static-lib \ | ||
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ | ||
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ | ||
--with-system-tre \ | ||
--without-aqua \ | ||
$(use_enable java) \ | ||
$(use_enable lto lto R) \ | ||
$(use_enable nls) \ | ||
$(use_enable openmp) \ | ||
$(use_enable profile R-profiling) \ | ||
$(use_enable profile memory-profiling) \ | ||
$(use_with cairo) \ | ||
$(use_with icu ICU) \ | ||
$(use_with jpeg jpeglib) \ | ||
$(use_with lapack) \ | ||
$(use_with !minimal recommended-packages) \ | ||
$(use_with png libpng) \ | ||
$(use_with readline) \ | ||
$(use_with tiff libtiff) \ | ||
$(use_with tk tcltk) \ | ||
$(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \ | ||
$(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \ | ||
$(use_with X x) | ||
} | ||
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src_compile() { | ||
export VARTEXFONTS="${T}"/fonts | ||
emake AR="$(tc-getAR)" | ||
emake -C src/nmath/standalone shared AR="$(tc-getAR)" | ||
use doc && emake info pdf | ||
} | ||
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src_install() { | ||
default | ||
emake -C src/nmath/standalone DESTDIR="${D}" install | ||
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if use doc; then | ||
emake DESTDIR="${D}" install-info install-pdf | ||
dosym ../manual /usr/share/doc/${PF}/html/manual | ||
fi | ||
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newenvd - 99R <<-_EOF_ | ||
LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib" | ||
R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}" | ||
_EOF_ | ||
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newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN} | ||
# The buildsystem has a different understanding of install_names than | ||
# we require. Since it builds modules like shared objects (wrong), many | ||
# objects (all modules) get an incorrect install_name. Fixing the build | ||
# system here is not really trivial. | ||
if [[ ${CHOST} == *-darwin* ]] ; then | ||
local mod | ||
pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die | ||
for mod in $(find . -name "*.dylib") ; do | ||
mod=${mod#./} | ||
install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}" | ||
done | ||
popd >/dev/null || die | ||
fi | ||
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# Users are encouraged to access some of the the R documentation | ||
# interactively, through functions like "contributors()" that | ||
# tries to open the "AUTHORS" file. Other files can be accessed | ||
# by name with RShowDoc(), and the documentation for e.g. license() | ||
# and RShowDoc() suggests a few of these names. Here we try to | ||
# collect as many names as possible that a user might actually | ||
# try to view through R, because if we don't decompress them, | ||
# then R doesn't know what to do with 'em. Bug #556706. | ||
local INTERACTIVE_DOCS=( | ||
AUTHORS | ||
COPYING | ||
FAQ | ||
NEWS | ||
THANKS | ||
) | ||
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# Other data sources that are shipped as "documentation," but which | ||
# need to be accessible via their original unmolested filenames. | ||
local INTERACTIVE_DATA=( | ||
BioC_mirrors.csv | ||
CRAN_mirrors.csv | ||
KEYWORDS.db | ||
NEWS.rds | ||
) | ||
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local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" ) | ||
for f in "${NOCOMPRESS_DOCS[@]}"; do | ||
docompress -x /usr/share/doc/${PF}/${f} | ||
done | ||
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# Finally, an extra copy of this started showing up at some point... | ||
rm "${ED}"/usr/$(get_libdir)/R/COPYING || die | ||
} | ||
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pkg_postinst() { | ||
if use java; then | ||
einfo "Re-initializing java paths for ${P}" | ||
R CMD javareconf | ||
fi | ||
} |