PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

Automated, smooth, N'th order derivatives of non-uniformly sampled time series data

Join subcellular Visium HD bins into cells

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

A massively parallel, high-level programming language

Detecting sites of genomic enrichment

Clockify Action for the Elgato Stream Deck

⏱️ Make time tracking a 🍰 piece of cake, with Toggl Track and Elgato Stream Deck (Toggl Track integration for Stream Deck)

Calibrated clustering via knockoffs for single-cell genomics

Performs a PheWAS analysis & generates a Manhattan plot using the PheWAS R package

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models

a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.

GPU-accelerated force graph layout and rendering

Graphical tool to make photo collage posters

Latent Embedding Multivariate Regression

Aliro: AI-Driven Data Science

🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.

Free and open-source software that allows users to set animated desktop wallpapers and screensavers powered by WinUI 3.

Cell2Sentence turns scRNA-seq data into text for LLM training.

Detecting intron retention from RNA-Seq experiments

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Application for making ENCODE Blacklists

Tool to merge VCF genotype files at scale

Tumor Mutational Burden