Follow up to Grace Blackwell's 661k dataset, for 2023

Genomic Biodiversity Interest Group

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures

Multiple Protein Structure Alignment at Scale with FoldMason

Pairwise whole genome aligner

Logan Unitigs and Contigs

R package to explore monophyly

Genome Association Predict Integrate Tools

Connect to ODBC databases (using the DBI interface)

Recipes Steps for Supervised Filter-Based Feature Selection

Miscellaneous functions for metagenomic analysis.

Import qiime2 artifacts to R

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

[OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data

Speedy versions of phyloseq functions

pathway based data integration and visualization

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

Enrichment Analysis for Gene Ontology. This version has "enrichment_barplot" function added to the package

Manipulation of SQLite-based annotations in Bioconductor

Client-side REST access to KEGG

The KEGGgraph package to parse KEGG pathways in R into graph objects

microbiome R package

Statistical analysis for sparse high-throughput sequencing

Files for the SBDI Sativa curated GTDB 16S sequence files

DFAST Quality Control: Taxonomy and completeness check

PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era