Segment Anything in Medical Images

the official Rust and C implementations of the BLAKE3 cryptographic hash function

Automated Grey and White Matter Segmentation in Digitized Aβ Human Brain Tissue WSI - Python Port

Quickly generate HTML documentation from a JSON schema

JavaScript tool for visualizing json-schemas

DSA Plugin for image de-identification using the dsa-wsi-deid plugin

This is a dash app that will help to organize imaging metadata for the BDSA App

FastAPI integrated with Celery, RabbitMQ, and Redis 😎⚡️

HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇

Working on a prototype where I use PostGIS as the backend to storage annotation data for images in the Digital Slide Archive

Tutorial on fine tuning DeepLabv3 segmentation network for your own segmentation task in PyTorch.

Dashboard and plotly/dash app for interacting with DSA and NeuroTK functions

Ultralytics YOLO11 🚀

Open source tools for computational pathology - Nature BME

Automated Grey and White Matter Segmentation in WSI

A test cli for classifying superpixels with arbitrary labels

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.

A little Python script to generate Cohen's Kappa and Weighted Kappa measures for inter-rater reliability

Fast R-CNN

Python and Pytorch two implements of Soft NMS algorithm

Node Version Manager - POSIX-compliant bash script to manage multiple active node.js versions

Brainchop: In-browser 3D MRI rendering and segmentation

Image Organizer app that uses the Webix Toolkit to interact with a Girder server

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite

YOLOv3 in PyTorch > ONNX > CoreML > TFLite

Object Detection Metrics. 14 object detection metrics: mean Average Precision (mAP), Average Recall (AR), Spatio-Temporal Tube Average Precision (STT-AP). This project supports different bounding b…