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Segment Anything in Medical Images
the official Rust and C implementations of the BLAKE3 cryptographic hash function
Quickly generate HTML documentation from a JSON schema
JavaScript tool for visualizing json-schemas
DSA Plugin for image de-identification using the dsa-wsi-deid plugin
This is a dash app that will help to organize imaging metadata for the BDSA App
FastAPI integrated with Celery, RabbitMQ, and Redis 😎⚡️
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
Working on a prototype where I use PostGIS as the backend to storage annotation data for images in the Digital Slide Archive
Tutorial on fine tuning DeepLabv3 segmentation network for your own segmentation task in PyTorch.
Dashboard and plotly/dash app for interacting with DSA and NeuroTK functions
Open source tools for computational pathology - Nature BME
Automated Grey and White Matter Segmentation in WSI
A test cli for classifying superpixels with arbitrary labels
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
A little Python script to generate Cohen's Kappa and Weighted Kappa measures for inter-rater reliability
Python and Pytorch two implements of Soft NMS algorithm
Node Version Manager - POSIX-compliant bash script to manage multiple active node.js versions
Brainchop: In-browser 3D MRI rendering and segmentation
Image Organizer app that uses the Webix Toolkit to interact with a Girder server
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite
YOLOv3 in PyTorch > ONNX > CoreML > TFLite
Object Detection Metrics. 14 object detection metrics: mean Average Precision (mAP), Average Recall (AR), Spatio-Temporal Tube Average Precision (STT-AP). This project supports different bounding b…
Pytorch implementation of FCN, UNet, PSPNet, and various encoder models.