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Genome modeling and design across all domains of life
🍒 Cherry Studio is a desktop client that supports for multiple LLM providers. Support deepseek-r1
AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg interfaces, and AbEpiTarget-1.0, optimised for selecting the ant…
EvolveX, a de novo antibody computational design pipeline.
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.
Chai-1, SOTA model for biomolecular structure prediction
Improved antibody structure-based design using inverse folding
Sequence analysis code for characterizing protein-protein interactions with YSA
A curated list of resources for using LLMs to develop more competitive grant applications.
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
📚 Tools and databases for analyzing HLA and VDJ genes.
Collection of publicly available IPTV channels from all over the world
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides and the potential immunogenicity of pMHC
Efficient evolution from protein language models
Predict the binding affinity of protein-protein complexes from structural data