[WIP] add SEAME kaldi recipes

egs/seame/s5/cmd.sh

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+# you can change cmd.sh depending on what type of queue you are using.
+# If you have no queueing system and want to run on a local machine, you
+# can change all instances 'queue.pl' to run.pl (but be careful and run
+# commands one by one: most recipes will exhaust the memory on your
+# machine).  queue.pl works with GridEngine (qsub).  slurm.pl works
+# with slurm.  Different queues are configured differently, with different
+# queue names and different ways of specifying things like memory;
+# to account for these differences you can create and edit the file
+# conf/queue.conf to match your queue's configuration.  Search for
+# conf/queue.conf in http://kaldi-asr.org/doc/queue.html for more information,
+# or search for the string 'default_config' in utils/queue.pl or utils/slurm.pl.
+
+export train_cmd="retry.pl queue.pl --mem 2G"
+export decode_cmd="retry.pl queue.pl --mem 4G"
+export mkgraph_cmd="retry.pl queue.pl --mem 8G"

egs/seame/s5/conf

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+../../wsj/s5/conf

egs/seame/s5/local/chain/run_chain_common.sh

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+#!/bin/bash
+
+# this script has common stages shared across librispeech chain recipes.
+# It generates a new topology in a new lang directory, gets the alignments as
+# lattices, and builds a tree for the new topology
+set -e
+
+stage=11
+
+# input directory names. These options are actually compulsory, and they have
+# been named for convenience
+gmm_dir=
+ali_dir=
+lores_train_data_dir=
+
+num_leaves=6000
+
+# output directory names. They are also compulsory.
+lang=
+lat_dir=
+tree_dir=
+# End configuration section.
+echo "$0 $@"  # Print the command line for logging
+
+. ./cmd.sh
+. ./path.sh
+. ./utils/parse_options.sh
+
+[ -z $lang ] && echo "Set --lang, this specifies the new lang directory which will have the new topology" && exit 1;
+[ -z $lat_dir ] && echo "Set --lat-dir, this specifies the experiment directory to store lattice" && exit 1;
+[ -z $tree_dir ] && echo "Set --tree-dir, this specifies the directory to store new tree " && exit 1;
+
+for f in $gmm_dir/final.mdl $ali_dir/ali.1.gz $lores_train_data_dir/feats.scp; do
+  [ ! -f $f ] && echo "$0: expected file $f to exist" && exit 1
+done
+
+if [ $stage -le 11 ]; then
+  echo "$0: creating lang directory with one state per phone."
+  # Create a version of the lang/ directory that has one state per phone in the
+  # topo file. [note, it really has two states.. the first one is only repeated
+  # once, the second one has zero or more repeats.]
+  if [ -d $lang ]; then
+    if [ $lang/L.fst -nt data/lang/L.fst ]; then
+      echo "$0: $lang already exists, not overwriting it; continuing"
+    else
+      echo "$0: $lang already exists and seems to be older than data/lang..."
+      echo " ... not sure what to do.  Exiting."
+      exit 1;
+    fi
+  else
+    cp -r data/lang $lang
+    silphonelist=$(cat $lang/phones/silence.csl) || exit 1;
+    nonsilphonelist=$(cat $lang/phones/nonsilence.csl) || exit 1;
+    # Use our special topology... note that later on may have to tune this
+    # topology.
+    steps/nnet3/chain/gen_topo.py $nonsilphonelist $silphonelist >$lang/topo
+  fi
+fi
+
+if [ $stage -le 12 ]; then
+  # Get the alignments as lattices (gives the chain training more freedom).
+  # use the same num-jobs as the alignments
+  nj=$(cat ${ali_dir}/num_jobs) || exit 1;
+  steps/align_fmllr_lats.sh --nj $nj --cmd "$train_cmd" ${lores_train_data_dir} \
+    $lang $gmm_dir $lat_dir
+  rm $lat_dir/fsts.*.gz # save space
+fi
+
+if [ $stage -le 13 ]; then
+  # Build a tree using our new topology. We know we have alignments for the
+  # speed-perturbed data (local/nnet3/run_ivector_common.sh made them), so use
+  # those.
+  if [ -f $tree_dir/final.mdl ]; then
+    echo "$0: $tree_dir/final.mdl already exists, refusing to overwrite it."
+    exit 1;
+  fi
+  steps/nnet3/chain/build_tree.sh --frame-subsampling-factor 3 \
+      --context-opts "--context-width=2 --central-position=1" \
+      --cmd "$train_cmd" $num_leaves ${lores_train_data_dir} $lang $ali_dir $tree_dir
+fi
+
+exit 0;

egs/seame/s5/local/chain/tuning/run_tdnn_1a.sh

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+#!/bin/bash
+
+# 1a matches the model and parameters in wsj 1g recipe.
+
+set -e -o pipefail
+
+# configs for 'chain'
+stage=0
+decode_nj=50
+train_set=train
+gmm=tri3   # this is the source gmm-dir that we'll use for alignments; it should
+           # have alignments for the specified training data.
+nnet3_affix=  # affix for exp dirs, e.g. it was _cleaned in librispeech
+
+# Options which are not passed through to run_ivector_common.sh
+affix=1a  #affix for TDNN directory e.g. "1a" or "1b", in case we change the configuration.
+tree_affix=
+train_stage=-10
+get_egs_stage=-10
+
+# TDNN options
+frames_per_eg=140,100,160
+remove_egs=true
+srand=0
+common_egs_dir=
+xent_regularize=0.1
+dropout_schedule='0,[email protected],[email protected],0'
+num_epochs=5
+
+# decode options
+test_online_decoding=false  # if true, it will run the last decoding stage.
+
+# End configuration section.
+echo "$0 $@"  # Print the command line for logging
+
+. ./cmd.sh
+. ./path.sh
+. ./utils/parse_options.sh
+
+if ! cuda-compiled; then
+  cat <<EOF && exit 1
+This script is intended to be used with GPUs but you have not compiled Kaldi with CUDA
+If you want to use GPUs (and have them), go to src/, and configure and make on a machine
+where "nvcc" is installed.
+EOF
+fi
+
+# The iVector-extraction and feature-dumping parts are the same as the standard
+# nnet3 setup, and you can skip them by setting "--stage 11" if you have already
+# run those things.
+
+local/nnet3/run_ivector_common.sh --stage $stage \
+                                  --train-set $train_set \
+                                  --gmm $gmm \
+                                  --num-threads-ubm 6 --num-processes 3 \
+                                  --nnet3-affix "$nnet3_affix" || exit 1;
+
+gmm_dir=exp/$gmm
+ali_dir=exp/${gmm}_ali_${train_set}_sp
+tree_dir=exp/chain${nnet3_affix}/tree_sp${tree_affix:+_$tree_affix}
+lang=data/lang_chain
+lat_dir=exp/chain${nnet3_affix}/${gmm}_${train_set}_sp_lats
+dir=exp/chain${nnet3_affix}/tdnn${affix:+_$affix}_sp
+train_data_dir=data/${train_set}_sp_hires
+lores_train_data_dir=data/${train_set}_sp
+train_ivector_dir=exp/nnet3${nnet3_affix}/ivectors_${train_set}_sp_hires
+
+# if we are using the speed-perturbed data we need to generate
+# alignments for it.
+
+for f in $gmm_dir/final.mdl $train_data_dir/feats.scp $train_ivector_dir/ivector_online.scp \
+    $lores_train_data_dir/feats.scp $ali_dir/ali.1.gz; do
+  [ ! -f $f ] && echo "$0: expected file $f to exist" && exit 1
+done
+
+# Please take this as a reference on how to specify all the options of
+# local/chain/run_chain_common.sh
+# ref for the number of tree leaves is from wsj recipe: local/chain/tuning/run_tdnn_1g.sh
+local/chain/run_chain_common.sh --stage $stage \
+                                --gmm-dir $gmm_dir \
+                                --ali-dir $ali_dir \
+                                --lores-train-data-dir ${lores_train_data_dir} \
+                                --lang $lang \
+                                --lat-dir $lat_dir \
+                                --num-leaves 3500 \
+                                --tree-dir $tree_dir || exit 1;
+
+if [ $stage -le 14 ]; then
+  echo "$0: creating neural net configs using the xconfig parser";
+
+  num_targets=$(tree-info $tree_dir/tree | grep num-pdfs | awk '{print $2}')
+  learning_rate_factor=$(echo "print 0.5/$xent_regularize" | python)
+  affine_opts="l2-regularize=0.01 dropout-proportion=0.0 dropout-per-dim=true dropout-per-dim-continuous=true"
+  tdnnf_opts="l2-regularize=0.01 dropout-proportion=0.0 bypass-scale=0.66"
+  linear_opts="l2-regularize=0.01 orthonormal-constraint=-1.0"
+  prefinal_opts="l2-regularize=0.01"
+  output_opts="l2-regularize=0.005"
+
+  mkdir -p $dir/configs
+
+  cat <<EOF > $dir/configs/network.xconfig
+  input dim=100 name=ivector
+  input dim=40 name=input
+
+  # please note that it is important to have input layer with the name=input
+  # as the layer immediately preceding the fixed-affine-layer to enable
+  # the use of short notation for the descriptor
+  fixed-affine-layer name=lda input=Append(-1,0,1,ReplaceIndex(ivector, t, 0)) affine-transform-file=$dir/configs/lda.mat
+
+  # the first splicing is moved before the lda layer, so no splicing here
+  relu-batchnorm-dropout-layer name=tdnn1 $affine_opts dim=1024
+  tdnnf-layer name=tdnnf2 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=1
+  tdnnf-layer name=tdnnf3 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=1
+  tdnnf-layer name=tdnnf4 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=1
+  tdnnf-layer name=tdnnf5 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=0
+  tdnnf-layer name=tdnnf6 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=3
+  tdnnf-layer name=tdnnf7 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=3
+  tdnnf-layer name=tdnnf8 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=3
+  tdnnf-layer name=tdnnf9 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=3
+  tdnnf-layer name=tdnnf10 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=3
+  tdnnf-layer name=tdnnf11 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=3
+  tdnnf-layer name=tdnnf12 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=3
+  tdnnf-layer name=tdnnf13 $tdnnf_opts dim=1024 bottleneck-dim=128 time-stride=3
+  linear-component name=prefinal-l dim=192 $linear_opts
+
+  prefinal-layer name=prefinal-chain input=prefinal-l $prefinal_opts big-dim=1024 small-dim=192
+  output-layer name=output include-log-softmax=false dim=$num_targets $output_opts
+
+  prefinal-layer name=prefinal-xent input=prefinal-l $prefinal_opts big-dim=1024 small-dim=192
+  output-layer name=output-xent dim=$num_targets learning-rate-factor=$learning_rate_factor $output_opts
+EOF
+  steps/nnet3/xconfig_to_configs.py --xconfig-file $dir/configs/network.xconfig --config-dir $dir/configs/
+fi
+
+if [ $stage -le 15 ]; then
+  if [[ $(hostname -f) == *.clsp.jhu.edu ]] && [ ! -d $dir/egs/storage ]; then
+    utils/create_split_dir.pl \
+     /export/b{09,10,11,12}/$USER/kaldi-data/egs/seame-$(date +'%m_%d_%H_%M')/s5/$dir/egs/storage $dir/egs/storage
+  fi
+
+  steps/nnet3/chain/train.py --stage $train_stage \
+    --cmd "$decode_cmd" \
+    --feat.online-ivector-dir $train_ivector_dir \
+    --feat.cmvn-opts "--norm-means=false --norm-vars=false" \
+    --chain.xent-regularize $xent_regularize \
+    --chain.leaky-hmm-coefficient 0.1 \
+    --chain.l2-regularize 0.0 \
+    --chain.apply-deriv-weights false \
+    --chain.lm-opts="--num-extra-lm-states=2000" \
+    --egs.dir "$common_egs_dir" \
+    --egs.stage $get_egs_stage \
+    --egs.opts "--frames-overlap-per-eg 0 --constrained false" \
+    --egs.chunk-width $frames_per_eg \
+    --trainer.dropout-schedule $dropout_schedule \
+    --trainer.srand=$srand \
+    --trainer.max-param-change 2.0 \
+    --trainer.add-option="--optimization.memory-compression-level=2" \
+    --trainer.num-chunk-per-minibatch 128,64 \
+    --trainer.frames-per-iter 500000 \
+    --trainer.num-epochs $num_epochs \
+    --trainer.optimization.num-jobs-initial 2 \
+    --trainer.optimization.num-jobs-final 8 \
+    --trainer.optimization.initial-effective-lrate 0.0005 \
+    --trainer.optimization.final-effective-lrate 0.00005 \
+    --cleanup.remove-egs $remove_egs \
+    --feat-dir $train_data_dir \
+    --tree-dir $tree_dir \
+    --lat-dir $lat_dir \
+    --dir $dir  || exit 1;
+
+fi
+
+graph_dir=$dir/graph
+if [ $stage -le 16 ]; then
+  # Note: it might appear that this $lang directory is mismatched, and it is as
+  # far as the 'topo' is concerned, but this script doesn't read the 'topo' from
+  # the lang directory.
+  utils/mkgraph.sh --self-loop-scale 1.0 --remove-oov data/lang_test $dir $graph_dir
+  # remove <UNK> from the graph, and convert back to const-FST.
+  fstrmsymbols --apply-to-output=true --remove-arcs=true "echo 3|" $graph_dir/HCLG.fst - | \
+    fstconvert --fst_type=const > $graph_dir/temp.fst
+  mv $graph_dir/temp.fst $graph_dir/HCLG.fst
+fi
+
+if [ $stage -le 17 ]; then
+  frames_per_chunk=$(echo $frames_per_eg | cut -d, -f1)
+  rm $dir/.error 2>/dev/null || true
+  for decode_set in dev_man dev_sge; do
+      (
+        nspk=$(wc -l <data/${decode_set}_hires/spk2utt)  
+        steps/nnet3/decode.sh \
+          --acwt 1.0 --post-decode-acwt 10.0 \
+          --frames-per-chunk $frames_per_chunk \
+          --nj $nspk --cmd "$decode_cmd" --num-threads 4 \
+          --online-ivector-dir exp/nnet3${nnet3_affix}/ivectors_${decode_set}_hires \
+          $graph_dir data/${decode_set}_hires $dir/decode_${decode_set} || exit 1
+      ) || touch $dir/.error &
+  done
+  wait
+  [ -f $dir/.error ] && echo "$0: there was a problem while decoding" && exit 1
+fi
+
+exit 0;