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A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.
Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly
Open source alternative to Google Meet and Zoom powered by LiveKit: HD video calls, screen sharing, and chat features. Built with Django and React.
A collaborative note taking, wiki and documentation platform that scales. Built with Django and React. Opensource alternative to Notion or Outline.
An experimental Snakemake remote executor plugin that only requires ssh
quickly filter fastq files by matching sequences to a set of regex patterns
Create videos of scrolling mel spectrograms from audio.
Various OpenScad project related to field recording
Wrapper of some vim/neovim's :terminal functions.
Implements sorting algorithm for directed acyclic as well as cyclic graphs. The directed cyclic graphs are sorted by determining the minimal amount of cyclic edges and optionally then also determin…
PanTax: Strain-level metagenomic profiling using pangenome graphs
Bring a functional programming mindset to R Markdown document generation
Docmost is an open-source collaborative wiki and documentation software. It is an open-source alternative to Confluence and Notion.
OpenSCAD script to generate inserts for IKEA Samla boxes
Long-read haplotyping of small sequences with SNP-encoded de Bruijn graphs
A command-line tool and Rust library with Python bindings for generating regular expressions from user-provided test cases
An easy-to-use and fast library for task-based parallelism, utilizing coroutines.
software to identify primers that can distinguish genomes
📈 📊 Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
Web App for generating 1D and 3D Lookup Tables (LUTs) for video cameras that shoot log gammas.