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## Welcome to the course

1. Welcome to Python in High Performance Computing (video)
2. [Prerequisities and structure of the course](python-and-performance/prerequisities.md)
3. How well do you know Python? (quiz)
4. [Setting up the programming environment](python-and-performance/setting-environment.md)

## Performance challenges in Python

5. Outline of Python performance issues (video)
6. [Why are Python programs slow?](python-and-performance/performance-bottlenecks.md)
7. Experiences about performance of Python programs (discussion)

## Performance analysis

8. [Where program spends time?](python-and-performance/performance-analysis.md)
9. [Using applications own timers](python-and-performance/using-own-timers.md)
10. [Measuring small code snippets with timeit](python-and-performance/using-timeit.md)
11. Using cProfile (video)
12. [Introducing heat equation](python-and-performance/heat-equation.md)
13. [Hands-on: Performance analysis of heat equation solver](../../performance/cprofile/)
14. Pros and cons of various performance analysis approaches (discussion)

## Revision

15. [Week 1 summary](python-and-performance/summary.md)


# Numerical computing

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1. Welcome to week 2 (video)
2. Differences between Python lists and NumPy arrays (video)
3. [Creating and accessing NumPy arrays](numerical-computing/creating-and-accessing.md)
4. Hands-on exercises (array-creation, array-slicing, split-combine)
4. [Hands-on: Array creation](../../numpy/array-creation/)
5. [Hands-on: Array slicing](../../numpy/array-slicing/)

## Operating with NumPy arrays

5. [Arithmetics and elementary functions](numerical-computing/simple-operations.md)
6. [Vectorised operations](numerical-computing/vectorised-operations.md)
7. [Broadcasting](numerical-computing/broadcasting.md)
8. Hands-on exercises (broadcast-translation, finite-difference,
numerical-integration)
6. [Arithmetics and elementary functions](numerical-computing/simple-operations.md)
7. [Vectorised operations](numerical-computing/vectorised-operations.md)
8. [Hands-on: Finite difference](../../numpy/finite-difference/)
9. [Hands-on: Numerical integration](../../numpy/integration/)
10. [Broadcasting](numerical-computing/broadcasting.md)
11. [Hands-on: Split and combine arrays](../../numpy/split-combine/)
12. [Hands-on: Translation with broadcasting](../../numpy/broadcast-translation/)
13. Avoiding explicit loops with NumPy arrays (discussion)

## NumPy tools

9. [File I/O](numerical-computing/file-io.md)
10. [Random numbers](numerical-computing/random-numbers.md)
11. [Linear algebra and polynomials](numerical-computing/linear-algebra.md)
12. Hands-on exercises (input-output, polynomials, random-numbers,
linear-algebra)
14. [File I/O](numerical-computing/file-io.md)
15. [Hands-on: Input and output](../../numpy/input-output/)
16. [Random numbers](numerical-computing/random-numbers.md)
17. [Hands-on: Random numbers](../../numpy/random-numbers/)
18. [Linear algebra and polynomials](numerical-computing/linear-algebra.md)
19. [Hands-on: Linear algebra](../../numpy/linear-algebra/)

## Deeper view into NumPy

13. [Anatomy of NumPy arrays](numerical-computing/anatomy-of-ndarray.md)
14. [Temporary arrays](numerical-computing/temporary-arrays.md)
15. [Speeding up complex expressions with Numexpr](numerical-computing/numexpr.md)
16. Hands-on exercises (temporary-arrays, numexpr)
20. [Anatomy of NumPy arrays](numerical-computing/anatomy-of-ndarray.md)
21. [Temporary arrays](numerical-computing/temporary-arrays.md)
22. [Hands-on: Temporary arrays](../../numpy/temporary-arrays/)
23. [Speeding up complex expressions with Numexpr](numerical-computing/numexpr.md)
24. [Hands-on: Numexpr](../../numpy/numexpr/)

## Revision

17. Summary of week 2
25. [Week 2 summary](numerical-computing/summary.md)
26. Limitations of NumPy (discussion)


# Using compiled code and libraries

## Using Cython

1. Welcome to week 3 (video)
2. [What is Cython?](using-compiled-code/what-is-cython.md)
3. [Creating Cython modules](using-compiled-code/creating-cython-modules.md)
4. [Hands-on: Creating a simple Cython extension](../../cython/simple-extension/)
5. [Using static typing](using-compiled-code/using-static-typing.md)
6. [Avoiding function call overheads](using-compiled-code/avoiding-function-call-overheads.md)
7. Where to add types? (video)
8. [Using NumPy with Cython](using-compiled-code/numpy-and-cython.md)
9. [Hands-on: Cythonizing heat equation solver](../../cython/heat-equation/)
10. How much speed up is possible with Cython? (discussion)
11. [Profiling Cython](using-compiled-code/profiling-cython.md)

## Interfacing with external libraries

12. [Interfacing C code with CFFI](using-compiled-code/interfacing-c-with-cffi.md)
13. [Hands-on: Utilizing C code](../../interface/c/)
14. [Interfacing C code with Cython](using-compiled-code/interfacing-c-with-cython.md)
15. [Interfacing Fortran code](using-compiled-code/interfacing-fortran.md)
16. [Hands-on: Utilizing Fortran code](../../interface/fortran/)

## Revision

17. [Week 3 summary](using-compiled-code/summary.md)
18. Different ways to use compiled code with Python (discussion)


# Parallel programming

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1. Welcome to week 4 (video)
2. [Parallel programming concepts](parallel-programming/concepts.md)
3. Processes and threads (video)
4. Quiz

## Message passing with Python

5. [Introduction to MPI](parallel-programming/intro-to-mpi.md)
6. MPI execution and data model (video)
7. [Case study: Parallel sum](parallel-programming/parallel-sum.md)
8. Hands-on exercises (hello-world)
4. [Introduction to MPI](parallel-programming/intro-to-mpi.md)
5. Execution and data model in MPI (video)
6. [Case study: Parallel sum](parallel-programming/parallel-sum.md)
7. [Hands-on: Hello world](../../mpi/hello-world/)

## Point-to-point communication

9. [MPI communication](parallel-programming/send-receive.md)
10. [Fast communication of large arrays](parallel-programming/send-receive-array.md)
11. [Non-blocking communication](parallel-programming/non-blocking.md)
12. [Communicators](parallel-programming/communicators.md)
13. Hands-on exercises (message-exchange, message-chain, non-blocking)
8. [MPI communication](parallel-programming/send-receive.md)
9. [Fast communication of large arrays](parallel-programming/send-receive-array.md)
10. [Hands-on: Message exchange](../../mpi/message-exchange/)
11. [Hands-on: Message chain](../../mpi/message-chain/)
12. [Non-blocking communication](parallel-programming/non-blocking.md)
13. [Hands-on: Non-blocking communication](../../mpi/non-blocking/)
14. [Communicators](parallel-programming/communicators.md)
15. Communication modes (discussion)

## Collective communication

14. [Collective communication: one to many](parallel-programming/collectives-1-to-n.md)
15. [Collective communication: many to one](parallel-programming/collectives-n-to-1.md)
16. [Collective communication: many to many](parallel-programming/collectives-n-to-n.md)
17. Hands-on exercises (collectives, heat-equation)
16. [Collective communication: one to many](parallel-programming/collectives-1-to-n.md)
17. [Collective communication: many to one](parallel-programming/collectives-n-to-1.md)
18. [Collective communication: many to many](parallel-programming/collectives-n-to-n.md)
19. Do you understand collective communication? (quiz)
20. [Hands-on: Collective operations](../../mpi/collectives/)

## Revision

18. Summary of week 4
21. [Week 4 summary](parallel-programming/summary.md)
22. [Bonus hands-on: Parallel heat equation solver](../../mpi/heat-equation/)

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